Wall clock time and date at job start Mon Mar 30 2020 02:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00109 * 2 1 4 4 H 1.08994 * 109.47149 * 30.00285 * 3 2 1 5 5 C 1.50702 * 109.47038 * 150.00087 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00465 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.72024 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.50700 * 109.47136 * 269.99734 * 3 2 1 14 14 C 1.38259 * 119.98935 * 324.72857 * 13 3 2 15 15 C 1.38224 * 120.05252 * 179.72128 * 14 13 3 16 16 C 1.38219 * 120.02467 * 0.55128 * 15 14 13 17 17 C 1.38439 * 119.97088 * 359.72178 * 16 15 14 18 18 F 1.35099 * 120.02333 * 180.02562 * 17 16 15 19 19 C 1.38178 * 119.98456 * 144.99770 * 13 3 2 20 20 H 1.09000 * 109.47249 * 299.99828 * 1 2 3 21 21 H 1.09000 * 109.47207 * 60.00021 * 1 2 3 22 22 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 24 24 H 1.07999 * 119.97230 * 359.97438 * 14 13 3 25 25 H 1.07997 * 119.99015 * 180.27092 * 15 14 13 26 26 H 1.07991 * 120.01343 * 179.70312 * 16 15 14 27 27 H 1.08006 * 120.01251 * 0.02723 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 3.3387 1.2638 0.7104 6 1 4.2407 1.5419 0.1856 7 6 3.4018 0.8763 2.0322 8 7 2.3034 0.5376 2.6712 9 14 5.0474 0.8321 2.9149 10 1 6.1215 1.2562 1.9813 11 1 5.0102 1.7548 4.0779 12 1 5.3187 -0.5493 3.3875 13 6 2.2146 1.7643 -1.4208 14 6 2.5651 0.8514 -2.3982 15 6 2.7473 1.2699 -3.7029 16 6 2.5903 2.6037 -4.0297 17 6 2.2449 3.5196 -3.0508 18 9 2.0907 4.8235 -3.3691 19 6 2.0571 3.0982 -1.7451 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.3478 0.2646 3.6010 24 1 2.6927 -0.1902 -2.1429 25 1 3.0168 0.5552 -4.4664 26 1 2.7374 2.9312 -5.0482 27 1 1.7879 3.8120 -0.9805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150127.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:56 Heat of formation + Delta-G solvation = -72.029818 kcal Electronic energy + Delta-G solvation = -13527.548808 eV Core-core repulsion = 10971.837763 eV Total energy + Delta-G solvation = -2555.711045 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.44503 -38.63845 -36.16575 -32.64135 -31.07670 -29.84583 -27.19896 -25.06086 -23.30955 -22.09796 -20.44633 -16.87856 -16.71094 -15.87123 -15.55739 -15.12649 -14.71870 -14.42563 -13.99995 -13.56816 -13.26776 -12.63522 -12.28991 -11.90425 -11.52793 -11.19042 -10.99572 -10.91448 -10.57835 -10.14723 -9.89026 -9.45489 -8.68203 -8.33996 -8.18227 -8.00727 -6.13956 -4.26020 1.76243 1.82099 3.25278 3.33455 3.38187 4.19714 4.37445 4.72162 5.01198 5.28257 5.37894 5.67357 5.79410 5.86769 6.03723 6.26190 6.43403 6.47398 6.59509 6.63283 6.72983 6.91375 7.00540 7.32800 7.51088 7.78596 8.07097 8.69581 8.92569 9.44414 10.93802 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032644 B = 0.010036 C = 0.008926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.535893 B = 2789.240220 C = 3136.212399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.248 3.752 4 H 0.031 0.969 5 C -0.522 4.522 6 H 0.066 0.934 7 C 0.079 3.921 8 N -0.863 5.863 9 Si 0.898 3.102 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 C -0.041 4.041 14 C -0.110 4.110 15 C -0.102 4.102 16 C -0.177 4.177 17 C 0.085 3.915 18 F -0.151 7.151 19 C -0.154 4.154 20 H 0.033 0.967 21 H 0.012 0.988 22 H 0.060 0.940 23 H 0.263 0.737 24 H 0.132 0.868 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 1.712 -8.173 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.191 3.809 4 H 0.048 0.952 5 C -0.559 4.559 6 H 0.084 0.916 7 C -0.127 4.127 8 N -0.499 5.499 9 Si 0.725 3.275 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 C -0.041 4.041 14 C -0.128 4.128 15 C -0.120 4.120 16 C -0.196 4.196 17 C 0.066 3.934 18 F -0.130 7.130 19 C -0.173 4.173 20 H 0.052 0.948 21 H 0.031 0.969 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.150 0.850 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.283 1.537 -8.015 8.261 hybrid contribution 0.590 0.428 0.432 0.848 sum -0.693 1.966 -7.583 7.864 Atomic orbital electron populations 1.22435 0.85473 1.00014 0.97930 1.88155 1.15833 1.30459 1.93992 1.18789 0.94785 0.82564 0.84720 0.95189 1.20997 0.92119 1.47517 0.95315 0.91590 1.25043 0.96762 0.93690 0.97248 1.70005 1.27176 1.42160 1.10589 0.86449 0.83690 0.77843 0.79511 1.19485 1.20806 1.20683 1.21147 0.92175 0.91758 0.99035 1.21137 0.98936 1.00943 0.91777 1.20959 0.99657 0.94578 0.96806 1.20898 1.06345 0.93725 0.98670 1.17704 1.03716 0.77758 0.94242 1.91431 1.93631 1.34323 1.93600 1.21050 1.04521 0.97383 0.94307 0.94796 0.96914 0.92187 0.92761 0.85037 0.85922 0.85910 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.81 101.05 1.09 1.91 15 2 O -0.37 -9.19 8.90 -35.23 -0.31 -9.50 15 3 C 0.25 6.20 2.17 -29.03 -0.06 6.14 15 4 H 0.03 0.80 7.70 -51.93 -0.40 0.40 15 5 C -0.52 -14.28 8.78 -34.44 -0.30 -14.58 15 6 H 0.07 1.80 7.74 -52.49 -0.41 1.39 15 7 C 0.08 2.16 5.40 -17.82 -0.10 2.06 15 8 N -0.86 -24.47 12.84 55.43 0.71 -23.76 15 9 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 15 10 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 13 C -0.04 -0.88 4.89 -104.64 -0.51 -1.39 15 14 C -0.11 -2.14 9.35 -39.58 -0.37 -2.51 15 15 C -0.10 -1.66 10.04 -39.59 -0.40 -2.05 15 16 C -0.18 -2.87 10.03 -39.51 -0.40 -3.27 15 17 C 0.08 1.54 7.30 -39.42 -0.29 1.25 15 18 F -0.15 -2.65 17.27 2.25 0.04 -2.61 15 19 C -0.15 -3.06 9.66 -39.52 -0.38 -3.45 15 20 H 0.03 0.73 8.09 -51.93 -0.42 0.31 15 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 22 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 24 H 0.13 2.59 7.64 -52.49 -0.40 2.19 15 25 H 0.12 1.59 8.06 -52.49 -0.42 1.16 15 26 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.13 2.49 8.06 -52.48 -0.42 2.07 15 LS Contribution 248.23 15.07 3.74 3.74 Total: -1.00 -28.76 248.23 -5.43 -34.20 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -2.88 Total: -2.09 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.71 Total: -15.89 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.71 Total: -23.76 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.31 Total: -9.50 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.76 -5.43 -34.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150127.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.834 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds