Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00198 * 2 1 4 4 H 1.08996 * 109.47149 * 334.54428 * 3 2 1 5 5 C 1.50697 * 109.46713 * 214.54173 * 3 2 1 6 6 H 1.08003 * 120.00116 * 245.33219 * 5 3 2 7 7 C 1.37885 * 119.99849 * 65.34029 * 5 3 2 8 8 N 1.31515 * 119.99809 * 355.04007 * 7 5 3 9 9 Si 1.86801 * 119.99700 * 175.04290 * 7 5 3 10 10 H 1.48495 * 109.46851 * 90.00153 * 9 7 5 11 11 H 1.48501 * 109.46770 * 209.99888 * 9 7 5 12 12 H 1.48497 * 109.47233 * 329.99612 * 9 7 5 13 13 C 1.50697 * 109.46884 * 94.54683 * 3 2 1 14 14 C 1.38270 * 119.98125 * 219.99930 * 13 3 2 15 15 C 1.38233 * 120.04950 * 179.97438 * 14 13 3 16 16 C 1.38225 * 120.02281 * 0.02562 * 15 14 13 17 17 C 1.38435 * 119.97479 * 359.97438 * 16 15 14 18 18 F 1.35098 * 120.02336 * 180.02562 * 17 16 15 19 19 C 1.38173 * 119.99218 * 39.72677 * 13 3 2 20 20 H 1.09004 * 109.46583 * 55.02860 * 1 2 3 21 21 H 1.09004 * 109.46993 * 295.03614 * 1 2 3 22 22 H 1.08990 * 109.47624 * 175.03434 * 1 2 3 23 23 H 0.96999 * 119.99262 * 179.97438 * 8 7 5 24 24 H 1.07993 * 119.98106 * 359.97438 * 14 13 3 25 25 H 1.07994 * 119.98429 * 180.02562 * 15 14 13 26 26 H 1.08000 * 120.00989 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.00999 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3105 2.0148 -0.4417 5 6 3.2838 1.2882 -0.8056 6 1 4.2322 1.4658 -0.3204 7 6 3.2381 1.0459 -2.1622 8 7 2.0968 0.7336 -2.7363 9 14 4.7972 1.1610 -3.1845 10 1 5.4639 -0.1654 -3.2216 11 1 4.4529 1.5807 -4.5668 12 1 5.7142 2.1592 -2.5781 13 6 2.3175 1.7185 1.4163 14 6 2.0870 3.0201 1.8219 15 6 2.3678 3.4004 3.1209 16 6 2.8799 2.4797 4.0157 17 6 3.1110 1.1762 3.6107 18 9 3.6110 0.2754 4.4846 19 6 2.8241 0.7950 2.3107 20 1 -0.3633 0.5891 -0.8422 21 1 -0.3633 0.4349 0.9311 22 1 -0.3634 -1.0237 -0.0889 23 1 2.0646 0.5635 -3.6907 24 1 1.6874 3.7403 1.1234 25 1 2.1870 4.4172 3.4367 26 1 3.0988 2.7769 5.0307 27 1 2.9995 -0.2228 1.9949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150128.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -72.410387 kcal Electronic energy + Delta-G solvation = -13542.586567 eV Core-core repulsion = 10986.859019 eV Total energy + Delta-G solvation = -2555.727548 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.40068 -38.62088 -36.16313 -32.64226 -31.01534 -29.91741 -27.18314 -25.05656 -23.35202 -21.98862 -20.48274 -16.85428 -16.72367 -15.86064 -15.58120 -15.08287 -14.70502 -14.48627 -13.85056 -13.56448 -13.25000 -12.63541 -12.28045 -11.89442 -11.60279 -11.12573 -10.98459 -10.94485 -10.60393 -10.17361 -9.88803 -9.40941 -8.67216 -8.29964 -8.18260 -8.02629 -6.15401 -4.27139 1.74950 1.84608 3.26146 3.32667 3.36427 4.19452 4.36348 4.77291 4.99722 5.27958 5.40104 5.64404 5.73150 5.93971 6.05216 6.28758 6.43853 6.55771 6.61008 6.66177 6.70563 6.85266 7.03703 7.31698 7.51370 7.77910 8.07148 8.72417 8.91637 9.43203 10.92231 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032554 B = 0.010052 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.891515 B = 2784.765192 C = 3038.443661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.372 6.372 3 C 0.246 3.754 4 H 0.035 0.965 5 C -0.521 4.521 6 H 0.065 0.935 7 C 0.078 3.922 8 N -0.865 5.865 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 C -0.038 4.038 14 C -0.132 4.132 15 C -0.100 4.100 16 C -0.178 4.178 17 C 0.084 3.916 18 F -0.150 7.150 19 C -0.131 4.131 20 H 0.036 0.964 21 H 0.010 0.990 22 H 0.058 0.942 23 H 0.263 0.737 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 3.343 7.744 8.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.290 6.290 3 C 0.190 3.810 4 H 0.052 0.948 5 C -0.558 4.558 6 H 0.083 0.917 7 C -0.129 4.129 8 N -0.501 5.501 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 C -0.039 4.039 14 C -0.150 4.150 15 C -0.118 4.118 16 C -0.197 4.197 17 C 0.065 3.935 18 F -0.129 7.129 19 C -0.150 4.150 20 H 0.055 0.945 21 H 0.029 0.971 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.142 0.858 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.213 3.098 7.608 8.304 hybrid contribution 0.679 0.069 -0.395 0.788 sum -0.534 3.166 7.214 7.896 Atomic orbital electron populations 1.22427 0.85332 1.00222 0.97673 1.88149 1.16041 1.30776 1.94050 1.18839 0.94482 0.82832 0.84846 0.94768 1.21013 0.92129 1.50649 0.92057 0.91728 1.25056 0.96449 0.93475 0.97874 1.70004 1.25184 1.43752 1.11145 0.86493 0.83064 0.78675 0.79217 1.20327 1.20984 1.19586 1.21097 0.92388 0.92380 0.98039 1.21143 1.01737 0.96478 0.95636 1.20861 0.98873 0.98680 0.93417 1.20892 1.05704 0.92391 1.00711 1.17815 1.00475 0.87135 0.88083 1.91432 1.85433 1.67269 1.68793 1.21055 1.01032 1.01991 0.90924 0.94523 0.97105 0.92298 0.92687 0.85816 0.85936 0.85909 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.88 101.05 1.10 1.97 15 2 O -0.37 -9.47 9.23 -35.23 -0.33 -9.80 15 3 C 0.25 6.16 2.14 -29.04 -0.06 6.10 15 4 H 0.03 0.90 7.52 -51.93 -0.39 0.51 15 5 C -0.52 -14.27 8.73 -34.44 -0.30 -14.57 15 6 H 0.06 1.76 7.75 -52.48 -0.41 1.36 15 7 C 0.08 2.12 5.43 -17.82 -0.10 2.02 15 8 N -0.86 -24.40 12.97 55.43 0.72 -23.68 15 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 15 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 13 C -0.04 -0.83 4.91 -104.64 -0.51 -1.35 15 14 C -0.13 -2.44 9.67 -39.57 -0.38 -2.82 15 15 C -0.10 -1.58 10.04 -39.59 -0.40 -1.98 15 16 C -0.18 -2.89 10.03 -39.51 -0.40 -3.28 15 17 C 0.08 1.57 7.30 -39.42 -0.29 1.28 15 18 F -0.15 -2.74 17.27 2.25 0.04 -2.70 15 19 C -0.13 -2.75 9.33 -39.52 -0.37 -3.11 15 20 H 0.04 0.80 7.98 -51.93 -0.41 0.38 15 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 24 H 0.12 2.12 8.04 -52.49 -0.42 1.70 15 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.14 2.97 7.77 -52.49 -0.41 2.56 15 LS Contribution 248.55 15.07 3.75 3.75 Total: -1.00 -28.85 248.55 -5.42 -34.26 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -2.87 Total: -1.98 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.71 Total: -15.74 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.72 Total: -23.68 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.33 Total: -9.80 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.85 -5.42 -34.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150128.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.147 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds