Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00198 * 2 1 4 4 H 1.08996 * 109.47149 * 334.54428 * 3 2 1 5 5 C 1.50697 * 109.46713 * 214.54173 * 3 2 1 6 6 H 1.08003 * 120.00116 * 245.33219 * 5 3 2 7 7 C 1.37885 * 119.99849 * 65.34029 * 5 3 2 8 8 N 1.31515 * 119.99809 * 355.04007 * 7 5 3 9 9 Si 1.86801 * 119.99700 * 175.04290 * 7 5 3 10 10 H 1.48495 * 109.46851 * 90.00153 * 9 7 5 11 11 H 1.48501 * 109.46770 * 209.99888 * 9 7 5 12 12 H 1.48497 * 109.47233 * 329.99612 * 9 7 5 13 13 C 1.50697 * 109.46884 * 94.54683 * 3 2 1 14 14 C 1.38270 * 119.98125 * 219.99930 * 13 3 2 15 15 C 1.38233 * 120.04950 * 179.97438 * 14 13 3 16 16 C 1.38225 * 120.02281 * 0.02562 * 15 14 13 17 17 C 1.38435 * 119.97479 * 359.97438 * 16 15 14 18 18 F 1.35098 * 120.02336 * 180.02562 * 17 16 15 19 19 C 1.38173 * 119.99218 * 39.72677 * 13 3 2 20 20 H 1.09004 * 109.46583 * 55.02860 * 1 2 3 21 21 H 1.09004 * 109.46993 * 295.03614 * 1 2 3 22 22 H 1.08990 * 109.47624 * 175.03434 * 1 2 3 23 23 H 0.96999 * 119.99262 * 179.97438 * 8 7 5 24 24 H 1.07993 * 119.98106 * 359.97438 * 14 13 3 25 25 H 1.07994 * 119.98429 * 180.02562 * 15 14 13 26 26 H 1.08000 * 120.00989 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.00999 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3105 2.0148 -0.4417 5 6 3.2838 1.2882 -0.8056 6 1 4.2322 1.4658 -0.3204 7 6 3.2381 1.0459 -2.1622 8 7 2.0968 0.7336 -2.7363 9 14 4.7972 1.1610 -3.1845 10 1 5.4639 -0.1654 -3.2216 11 1 4.4529 1.5807 -4.5668 12 1 5.7142 2.1592 -2.5781 13 6 2.3175 1.7185 1.4163 14 6 2.0870 3.0201 1.8219 15 6 2.3678 3.4004 3.1209 16 6 2.8799 2.4797 4.0157 17 6 3.1110 1.1762 3.6107 18 9 3.6110 0.2754 4.4846 19 6 2.8241 0.7950 2.3107 20 1 -0.3633 0.5891 -0.8422 21 1 -0.3633 0.4349 0.9311 22 1 -0.3634 -1.0237 -0.0889 23 1 2.0646 0.5635 -3.6907 24 1 1.6874 3.7403 1.1234 25 1 2.1870 4.4172 3.4367 26 1 3.0988 2.7769 5.0307 27 1 2.9995 -0.2228 1.9949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150128.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -89.347187 kcal Electronic energy + Delta-G solvation = -13543.321002 eV Core-core repulsion = 10986.859019 eV Total energy + Delta-G solvation = -2556.461983 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.83820 -40.15756 -37.94952 -34.67819 -32.62003 -31.36625 -29.00338 -26.90283 -25.12611 -23.43124 -22.11424 -18.78632 -18.35121 -17.43169 -17.00202 -16.63567 -16.52238 -16.17867 -15.61654 -15.41957 -14.62893 -14.16213 -14.01659 -13.56024 -13.22417 -12.84869 -12.76723 -12.54164 -12.28314 -11.98050 -11.66190 -11.38736 -10.71217 -10.03100 -9.77780 -9.52958 -8.21268 -6.40941 0.30077 0.41652 1.40928 1.42410 1.53130 2.37992 2.76213 3.00076 3.35594 3.77285 3.94650 4.07277 4.30238 4.48158 4.56102 4.63188 4.75903 4.92268 4.98279 5.08406 5.21181 5.29560 5.46290 5.67993 5.76912 6.02129 6.12157 6.65412 7.03164 7.33269 8.85869 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032554 B = 0.010052 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.891515 B = 2784.765192 C = 3038.443661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.400 6.400 3 C 0.249 3.751 4 H 0.013 0.987 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.895 5.895 9 Si 0.963 3.037 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.264 1.264 13 C -0.066 4.066 14 C -0.138 4.138 15 C -0.081 4.081 16 C -0.161 4.161 17 C 0.076 3.924 18 F -0.150 7.150 19 C -0.151 4.151 20 H 0.023 0.977 21 H 0.030 0.970 22 H 0.078 0.922 23 H 0.266 0.734 24 H 0.133 0.867 25 H 0.171 0.829 26 H 0.163 0.837 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 4.836 9.215 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.319 6.319 3 C 0.193 3.807 4 H 0.031 0.969 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.174 4.174 8 N -0.532 5.532 9 Si 0.787 3.213 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.189 1.189 13 C -0.066 4.066 14 C -0.156 4.156 15 C -0.099 4.099 16 C -0.180 4.180 17 C 0.057 3.943 18 F -0.129 7.129 19 C -0.171 4.171 20 H 0.042 0.958 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.151 0.849 25 H 0.188 0.812 26 H 0.180 0.820 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.757 4.594 9.088 10.211 hybrid contribution 0.487 -0.386 -0.760 0.982 sum -0.270 4.207 8.328 9.335 Atomic orbital electron populations 1.22516 0.83397 1.01424 0.98124 1.88048 1.18252 1.31202 1.94401 1.18622 0.93062 0.82049 0.86959 0.96920 1.21329 0.92890 1.50896 0.92962 0.92599 1.25864 0.99532 0.93035 0.98964 1.70104 1.27034 1.44659 1.11450 0.85500 0.79342 0.78610 0.77855 1.20304 1.20002 1.18866 1.20812 0.95092 0.94208 0.96512 1.21342 1.01656 0.95161 0.97448 1.21325 0.96301 1.00662 0.91579 1.21356 1.03325 0.90767 1.02524 1.17912 1.00801 0.88350 0.87206 1.91431 1.85443 1.67573 1.68446 1.20878 1.02802 1.00953 0.92423 0.95807 0.95106 0.90386 0.92534 0.84940 0.81157 0.81957 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.83 10.88 113.37 1.23 3.07 15 2 O -0.40 -21.08 9.23 -148.98 -1.37 -22.46 15 3 C 0.25 12.88 2.14 29.10 0.06 12.94 15 4 H 0.01 0.71 7.52 -2.39 -0.02 0.69 15 5 C -0.54 -30.62 8.73 25.60 0.22 -30.40 15 6 H 0.06 3.14 7.75 -2.91 -0.02 3.12 15 7 C 0.03 1.61 5.43 84.66 0.46 2.07 15 8 N -0.90 -51.71 12.97 21.45 0.28 -51.43 15 9 Si 0.96 43.42 29.54 68.60 2.03 45.45 15 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 15 13 C -0.07 -2.87 4.91 -19.87 -0.10 -2.97 15 14 C -0.14 -4.87 9.67 22.28 0.22 -4.65 15 15 C -0.08 -2.20 10.04 22.27 0.22 -1.98 15 16 C -0.16 -4.55 10.03 22.31 0.22 -4.33 15 17 C 0.08 2.72 7.30 22.38 0.16 2.88 15 18 F -0.15 -5.25 17.27 44.97 0.78 -4.48 15 19 C -0.15 -6.42 9.33 22.31 0.21 -6.21 15 20 H 0.02 1.06 7.98 -2.38 -0.02 1.04 15 21 H 0.03 1.18 8.14 -2.39 -0.02 1.17 15 22 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 23 H 0.27 14.42 8.31 -92.71 -0.77 13.65 15 24 H 0.13 4.35 8.04 -2.91 -0.02 4.33 15 25 H 0.17 3.07 8.06 -2.91 -0.02 3.05 15 26 H 0.16 3.36 8.06 -2.91 -0.02 3.34 15 27 H 0.11 5.13 7.77 -2.91 -0.02 5.11 15 Total: -1.00 -63.48 248.55 5.78 -57.70 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.16 Total: 4.79 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 2.92 Total: -29.57 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.28 Total: -51.43 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.37 Total: -22.46 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -63.48 5.78 -57.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150128.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.650 kcal (2) G-P(sol) polarization free energy of solvation -63.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds