Wall clock time and date at job start Mon Mar 30 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00307 * 2 1 4 4 H 1.09000 * 109.47093 * 31.41723 * 3 2 1 5 5 C 1.50697 * 109.47387 * 271.42086 * 3 2 1 6 6 H 1.07997 * 119.99966 * 302.93997 * 5 3 2 7 7 C 1.37886 * 120.00307 * 122.93868 * 5 3 2 8 8 N 1.31516 * 119.99936 * 173.53196 * 7 5 3 9 9 Si 1.86798 * 119.99713 * 353.53192 * 7 5 3 10 10 H 1.48501 * 109.47032 * 84.94758 * 9 7 5 11 11 H 1.48502 * 109.47140 * 204.94647 * 9 7 5 12 12 H 1.48497 * 109.47167 * 324.95015 * 9 7 5 13 13 C 1.50703 * 109.47587 * 151.41862 * 3 2 1 14 14 C 1.38242 * 119.97199 * 39.72709 * 13 3 2 15 15 C 1.38195 * 120.02651 * 179.72978 * 14 13 3 16 16 C 1.38464 * 119.96927 * 0.52529 * 15 14 13 17 17 F 1.35099 * 120.02284 * 179.72789 * 16 15 14 18 18 C 1.38459 * 119.95220 * 359.74778 * 16 15 14 19 19 C 1.38198 * 119.97157 * 0.02562 * 18 16 15 20 20 H 1.09000 * 109.47098 * 304.31281 * 1 2 3 21 21 H 1.09003 * 109.47122 * 64.30657 * 1 2 3 22 22 H 1.08998 * 109.47348 * 184.30974 * 1 2 3 23 23 H 0.96998 * 119.99393 * 179.97438 * 8 7 5 24 24 H 1.08001 * 119.98673 * 359.97438 * 14 13 3 25 25 H 1.07999 * 120.01510 * 180.29361 * 15 14 13 26 26 H 1.07997 * 120.01274 * 179.97438 * 18 16 15 27 27 H 1.07997 * 119.98534 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3569 1.9940 0.5357 5 6 2.1824 1.7787 -1.4203 6 1 2.7621 1.1927 -2.1182 7 6 1.5999 2.9597 -1.8289 8 7 1.8533 3.4377 -3.0277 9 14 0.4509 3.8809 -0.6798 10 1 1.2467 4.7502 0.2237 11 1 -0.4810 4.7177 -1.4777 12 1 -0.3264 2.9071 0.1282 13 6 3.3544 1.2569 0.6797 14 6 4.1980 0.1827 0.4660 15 6 5.4332 0.1398 1.0843 16 6 5.8211 1.1679 1.9268 17 9 7.0261 1.1243 2.5361 18 6 4.9730 2.2405 2.1445 19 6 3.7402 2.2835 1.5213 20 1 -0.3633 0.5793 0.8488 21 1 -0.3633 0.4456 -0.9261 22 1 -0.3634 -1.0247 0.0772 23 1 1.4432 4.2684 -3.3152 24 1 3.8933 -0.6213 -0.1876 25 1 6.0940 -0.6972 0.9135 26 1 5.2744 3.0427 2.8017 27 1 3.0787 3.1202 1.6907 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:03 Heat of formation + Delta-G solvation = -70.322982 kcal Electronic energy + Delta-G solvation = -13522.229037 eV Core-core repulsion = 10966.592006 eV Total energy + Delta-G solvation = -2555.637031 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.44058 -38.69228 -36.54029 -32.80903 -30.90713 -30.56351 -27.15524 -25.71738 -22.81358 -22.38843 -20.36034 -17.32196 -17.18042 -15.97766 -15.55771 -15.14903 -15.00721 -14.39201 -13.93841 -13.53235 -13.01131 -12.89642 -12.65455 -12.38262 -12.01089 -11.50967 -11.10017 -10.88228 -10.61778 -10.48678 -9.87919 -9.53025 -8.85282 -8.56747 -8.49747 -7.81775 -6.32393 -4.35153 1.75625 1.81251 3.08979 3.15348 3.19245 4.15883 4.19118 4.76466 4.77121 5.05165 5.29289 5.33114 5.81083 5.92049 5.96447 6.05038 6.16742 6.37500 6.43807 6.49912 6.63002 6.68873 6.95668 7.21513 7.35131 7.49241 8.09804 8.38086 8.80470 9.28470 10.79879 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.034167 B = 0.010606 C = 0.009535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.304746 B = 2639.346517 C = 2935.914453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.400 6.400 3 C 0.210 3.790 4 H 0.035 0.965 5 C -0.525 4.525 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.880 5.880 9 Si 0.866 3.134 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.263 1.263 13 C -0.041 4.041 14 C -0.072 4.072 15 C -0.155 4.155 16 C 0.066 3.934 17 F -0.153 7.153 18 C -0.153 4.153 19 C -0.100 4.100 20 H 0.023 0.977 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.269 0.731 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -2.946 8.715 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.320 6.320 3 C 0.155 3.845 4 H 0.052 0.948 5 C -0.562 4.562 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.516 5.516 9 Si 0.693 3.307 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.041 4.041 14 C -0.090 4.090 15 C -0.174 4.174 16 C 0.047 3.953 17 F -0.131 7.131 18 C -0.171 4.171 19 C -0.118 4.118 20 H 0.042 0.958 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.151 0.849 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.403 -2.953 8.592 9.194 hybrid contribution -0.547 0.964 0.465 1.202 sum 0.856 -1.990 9.057 9.313 Atomic orbital electron populations 1.22449 0.83041 1.00274 0.99480 1.87767 1.18030 1.30968 1.95219 1.19143 0.87409 0.82412 0.95576 0.94777 1.21310 1.33778 1.07064 0.94051 0.89896 1.25120 0.95707 0.96625 0.95089 1.69892 1.42472 1.20696 1.18582 0.87037 0.81922 0.80386 0.81396 1.19548 1.20760 1.18769 1.20275 0.98107 0.93112 0.92653 1.20835 0.91806 0.98436 0.97922 1.21076 0.98241 0.98734 0.99366 1.17595 0.81975 0.97602 0.98148 1.91423 1.43052 1.96760 1.81911 1.20921 0.94932 0.98128 1.03164 1.20764 0.95818 0.98778 0.96461 0.95838 0.94068 0.91450 0.92105 0.84851 0.85573 0.85584 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 10.85 101.05 1.10 1.95 15 2 O -0.40 -8.97 9.65 -35.23 -0.34 -9.31 15 3 C 0.21 4.93 2.29 -29.03 -0.07 4.87 15 4 H 0.03 0.79 4.15 -51.93 -0.22 0.58 15 5 C -0.52 -14.31 9.14 -34.44 -0.31 -14.63 15 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 15 7 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 8 N -0.88 -25.70 13.96 55.43 0.77 -24.92 15 9 Si 0.87 19.99 27.02 -169.99 -4.59 15.40 15 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 H -0.26 -5.72 6.69 56.52 0.38 -5.34 15 13 C -0.04 -0.87 4.96 -104.62 -0.52 -1.39 15 14 C -0.07 -1.41 9.35 -39.60 -0.37 -1.78 15 15 C -0.16 -2.71 10.03 -39.51 -0.40 -3.11 15 16 C 0.07 1.16 7.30 -39.42 -0.29 0.87 15 17 F -0.15 -2.57 17.27 2.25 0.04 -2.54 15 18 C -0.15 -2.64 10.03 -39.51 -0.40 -3.04 15 19 C -0.10 -1.93 9.67 -39.59 -0.38 -2.31 15 20 H 0.02 0.42 7.99 -51.93 -0.41 0.00 15 21 H 0.04 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 24 H 0.13 2.58 7.77 -52.49 -0.41 2.17 15 25 H 0.13 1.86 8.06 -52.49 -0.42 1.44 15 26 H 0.13 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.12 2.22 8.04 -52.49 -0.42 1.80 15 LS Contribution 244.58 15.07 3.69 3.69 Total: -1.00 -28.82 244.58 -4.90 -33.72 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -2.73 Total: 0.46 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.73 Total: -16.49 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.77 Total: -24.92 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.34 Total: -9.31 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.59 Total: 15.40 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.82 -4.90 -33.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.605 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds