Wall clock time and date at job start Mon Mar 30 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00307 * 2 1 4 4 H 1.09000 * 109.47093 * 31.41723 * 3 2 1 5 5 C 1.50697 * 109.47387 * 271.42086 * 3 2 1 6 6 H 1.07997 * 119.99966 * 302.93997 * 5 3 2 7 7 C 1.37886 * 120.00307 * 122.93868 * 5 3 2 8 8 N 1.31516 * 119.99936 * 173.53196 * 7 5 3 9 9 Si 1.86798 * 119.99713 * 353.53192 * 7 5 3 10 10 H 1.48501 * 109.47032 * 84.94758 * 9 7 5 11 11 H 1.48502 * 109.47140 * 204.94647 * 9 7 5 12 12 H 1.48497 * 109.47167 * 324.95015 * 9 7 5 13 13 C 1.50703 * 109.47587 * 151.41862 * 3 2 1 14 14 C 1.38242 * 119.97199 * 39.72709 * 13 3 2 15 15 C 1.38195 * 120.02651 * 179.72978 * 14 13 3 16 16 C 1.38464 * 119.96927 * 0.52529 * 15 14 13 17 17 F 1.35099 * 120.02284 * 179.72789 * 16 15 14 18 18 C 1.38459 * 119.95220 * 359.74778 * 16 15 14 19 19 C 1.38198 * 119.97157 * 0.02562 * 18 16 15 20 20 H 1.09000 * 109.47098 * 304.31281 * 1 2 3 21 21 H 1.09003 * 109.47122 * 64.30657 * 1 2 3 22 22 H 1.08998 * 109.47348 * 184.30974 * 1 2 3 23 23 H 0.96998 * 119.99393 * 179.97438 * 8 7 5 24 24 H 1.08001 * 119.98673 * 359.97438 * 14 13 3 25 25 H 1.07999 * 120.01510 * 180.29361 * 15 14 13 26 26 H 1.07997 * 120.01274 * 179.97438 * 18 16 15 27 27 H 1.07997 * 119.98534 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3569 1.9940 0.5357 5 6 2.1824 1.7787 -1.4203 6 1 2.7621 1.1927 -2.1182 7 6 1.5999 2.9597 -1.8289 8 7 1.8533 3.4377 -3.0277 9 14 0.4509 3.8809 -0.6798 10 1 1.2467 4.7502 0.2237 11 1 -0.4810 4.7177 -1.4777 12 1 -0.3264 2.9071 0.1282 13 6 3.3544 1.2569 0.6797 14 6 4.1980 0.1827 0.4660 15 6 5.4332 0.1398 1.0843 16 6 5.8211 1.1679 1.9268 17 9 7.0261 1.1243 2.5361 18 6 4.9730 2.2405 2.1445 19 6 3.7402 2.2835 1.5213 20 1 -0.3633 0.5793 0.8488 21 1 -0.3633 0.4456 -0.9261 22 1 -0.3634 -1.0247 0.0772 23 1 1.4432 4.2684 -3.3152 24 1 3.8933 -0.6213 -0.1876 25 1 6.0940 -0.6972 0.9135 26 1 5.2744 3.0427 2.8017 27 1 3.0787 3.1202 1.6907 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:03 Heat of formation + Delta-G solvation = -87.992063 kcal Electronic energy + Delta-G solvation = -13522.995226 eV Core-core repulsion = 10966.592006 eV Total energy + Delta-G solvation = -2556.403220 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.80938 -40.22567 -38.20418 -34.82751 -32.55691 -31.99601 -28.93948 -27.35891 -24.53558 -23.83797 -21.98888 -19.33914 -18.59047 -17.59631 -17.12881 -16.72714 -16.49255 -16.09122 -15.43960 -15.22212 -14.75177 -14.36789 -14.12808 -14.02474 -13.64180 -13.16220 -12.87896 -12.42395 -12.31168 -11.91484 -11.86741 -11.28986 -10.88091 -10.26054 -9.96771 -9.37871 -8.40890 -6.50444 0.28132 0.37841 1.28347 1.30517 1.39650 2.23504 2.65507 2.98319 3.23090 3.35296 3.88590 4.02506 4.21684 4.40596 4.50724 4.58105 4.63174 4.82699 4.91199 5.04347 5.16077 5.20595 5.36002 5.42981 5.72569 6.02445 6.09275 6.50966 6.68516 7.19472 8.75634 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.034167 B = 0.010606 C = 0.009535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.304746 B = 2639.346517 C = 2935.914453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.413 6.413 3 C 0.217 3.783 4 H 0.042 0.958 5 C -0.534 4.534 6 H 0.032 0.968 7 C 0.024 3.976 8 N -0.933 5.933 9 Si 0.928 3.072 10 H -0.251 1.251 11 H -0.280 1.280 12 H -0.241 1.241 13 C -0.073 4.073 14 C -0.085 4.085 15 C -0.150 4.150 16 C 0.068 3.932 17 F -0.145 7.145 18 C -0.145 4.145 19 C -0.107 4.107 20 H 0.040 0.960 21 H 0.024 0.976 22 H 0.102 0.898 23 H 0.271 0.729 24 H 0.125 0.875 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -2.584 11.209 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.332 6.332 3 C 0.161 3.839 4 H 0.060 0.940 5 C -0.572 4.572 6 H 0.050 0.950 7 C -0.175 4.175 8 N -0.571 5.571 9 Si 0.750 3.250 10 H -0.175 1.175 11 H -0.206 1.206 12 H -0.164 1.164 13 C -0.073 4.073 14 C -0.103 4.103 15 C -0.169 4.169 16 C 0.049 3.951 17 F -0.124 7.124 18 C -0.163 4.163 19 C -0.125 4.125 20 H 0.058 0.942 21 H 0.043 0.957 22 H 0.120 0.880 23 H 0.081 0.919 24 H 0.143 0.857 25 H 0.171 0.829 26 H 0.177 0.823 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.306 -2.616 11.105 11.483 hybrid contribution -0.421 0.735 -0.322 0.906 sum 0.886 -1.881 10.783 10.981 Atomic orbital electron populations 1.22719 0.81297 1.02825 0.99273 1.87736 1.20023 1.30315 1.95168 1.18971 0.88932 0.82727 0.93264 0.94024 1.21442 1.33122 1.06857 0.95744 0.94969 1.26001 0.97254 0.97560 0.96734 1.70044 1.44394 1.21670 1.21037 0.86040 0.79896 0.79470 0.79604 1.17542 1.20615 1.16430 1.20303 0.97535 0.94902 0.94605 1.20840 0.92777 0.98220 0.98481 1.21280 0.97574 0.99598 0.98409 1.17714 0.82162 0.97550 0.97698 1.91448 1.42571 1.96709 1.81665 1.21220 0.93824 0.98682 1.02605 1.20939 0.96885 0.98420 0.96228 0.94152 0.95749 0.87985 0.91946 0.85683 0.82925 0.82328 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.85 113.37 1.23 2.52 15 2 O -0.41 -18.34 9.65 -148.98 -1.44 -19.78 15 3 C 0.22 10.13 2.29 29.10 0.07 10.19 15 4 H 0.04 1.85 4.15 -2.39 -0.01 1.84 15 5 C -0.53 -30.05 9.14 25.60 0.23 -29.82 15 6 H 0.03 2.06 8.06 -2.91 -0.02 2.04 15 7 C 0.02 1.36 5.47 84.66 0.46 1.82 15 8 N -0.93 -56.30 13.96 21.45 0.30 -56.00 15 9 Si 0.93 40.49 27.02 68.60 1.85 42.34 15 10 H -0.25 -10.18 7.11 99.48 0.71 -9.47 15 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 12 H -0.24 -9.53 6.69 99.48 0.67 -8.86 15 13 C -0.07 -3.06 4.96 -19.86 -0.10 -3.16 15 14 C -0.08 -3.31 9.35 22.26 0.21 -3.10 15 15 C -0.15 -4.95 10.03 22.31 0.22 -4.73 15 16 C 0.07 2.19 7.30 22.38 0.16 2.35 15 17 F -0.15 -4.41 17.27 44.97 0.78 -3.63 15 18 C -0.14 -4.55 10.03 22.31 0.22 -4.33 15 19 C -0.11 -3.87 9.67 22.26 0.22 -3.66 15 20 H 0.04 1.33 7.99 -2.39 -0.02 1.31 15 21 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 22 H 0.10 2.97 8.14 -2.39 -0.02 2.95 15 23 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 24 H 0.13 4.95 7.77 -2.91 -0.02 4.93 15 25 H 0.15 4.12 8.06 -2.91 -0.02 4.10 15 26 H 0.16 3.90 8.06 -2.91 -0.02 3.88 15 27 H 0.14 4.50 8.04 -2.91 -0.02 4.47 15 Total: -1.00 -63.38 244.58 5.55 -57.84 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.13 Total: 11.14 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 2.93 Total: -31.90 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.30 Total: -56.00 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.44 Total: -19.78 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.85 Total: 42.34 kcal Total: -63.38 5.55 -57.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.156 kcal (2) G-P(sol) polarization free energy of solvation -63.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds