Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35510 * 117.00276 * 2 1 4 4 N 1.32784 * 120.47404 * 359.97438 * 3 2 1 5 5 C 1.32274 * 120.66169 * 179.72746 * 4 3 2 6 6 O 1.35452 * 119.16579 * 179.97438 * 5 4 3 7 7 N 1.32319 * 121.67054 * 359.97438 * 5 4 3 8 8 C 1.32454 * 120.90675 * 0.02562 * 7 5 4 9 9 C 1.38234 * 119.24218 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.76507 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47148 * 264.95692 * 10 9 8 12 12 H 1.08005 * 120.00109 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99823 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99703 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00003 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46896 * 89.99894 * 15 13 11 17 17 H 1.48500 * 109.46868 * 209.99281 * 15 13 11 18 18 H 1.48496 * 109.47051 * 329.99904 * 15 13 11 19 19 H 1.08997 * 109.46923 * 299.99848 * 1 2 3 20 20 H 1.08992 * 109.46807 * 60.00355 * 1 2 3 21 21 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 22 22 H 0.96702 * 114.00336 * 89.99896 * 6 5 4 23 23 H 1.07994 * 120.38122 * 180.02562 * 8 7 5 24 24 H 1.09007 * 109.46681 * 24.95388 * 10 9 8 25 25 H 1.08999 * 109.47021 * 144.95415 * 10 9 8 26 26 H 0.97001 * 119.99957 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 7 1.3304 2.3270 -0.0005 5 6 1.9271 3.5075 0.0049 6 8 1.1693 4.6302 0.0037 7 7 3.2455 3.6195 0.0115 8 6 4.0196 2.5447 0.0124 9 6 3.4355 1.2918 0.0058 10 6 4.2835 0.0459 0.0072 11 6 4.4707 -0.4358 -1.4084 12 1 4.0203 0.1057 -2.2271 13 6 5.2169 -1.5680 -1.6582 14 7 5.3799 -1.9887 -2.8935 15 14 5.9952 -2.5050 -0.2420 16 1 5.0481 -3.5387 0.2474 17 1 7.2442 -3.1592 -0.7084 18 1 6.3121 -1.5621 0.8606 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 0.9449 4.9543 0.8867 23 1 5.0948 2.6459 0.0182 24 1 5.2558 0.2687 0.4468 25 1 3.7891 -0.7293 0.5925 26 1 5.9046 -2.7854 -3.0693 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236713.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -26.371256 kcal Electronic energy + Delta-G solvation = -13566.456297 eV Core-core repulsion = 11032.645117 eV Total energy + Delta-G solvation = -2533.811180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.89264 -38.37061 -36.83825 -33.74002 -32.75994 -31.63483 -27.89017 -27.05649 -23.80908 -23.44125 -21.17361 -19.22143 -18.06666 -17.03869 -16.79741 -15.82164 -15.05426 -14.55394 -14.43652 -13.75526 -13.35537 -12.97069 -12.42046 -12.14020 -11.73183 -11.63645 -11.38417 -11.26287 -10.64415 -10.27035 -10.04319 -9.79607 -9.44995 -8.93645 -8.60637 -8.10272 -6.10692 -4.10717 1.31019 1.53771 3.20556 3.27365 3.34930 3.35807 3.51899 4.10437 4.38220 4.57011 5.18211 5.26254 5.45522 5.46605 5.51727 5.74718 5.82932 5.95878 6.55432 6.92682 7.11653 7.15572 7.37095 7.60742 7.75782 8.37734 8.42649 8.91662 9.48167 11.02300 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.039027 B = 0.009735 C = 0.008673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.277406 B = 2875.401565 C = 3227.519886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.278 6.278 3 C 0.375 3.625 4 N -0.586 5.586 5 C 0.494 3.506 6 O -0.461 6.461 7 N -0.545 5.545 8 C 0.173 3.827 9 C -0.151 4.151 10 C 0.033 3.967 11 C -0.513 4.513 12 H 0.071 0.929 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.879 3.121 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.264 1.264 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.097 0.903 22 H 0.402 0.598 23 H 0.179 0.821 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 6.079 9.135 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.181 6.181 3 C 0.188 3.812 4 N -0.328 5.328 5 C 0.189 3.811 6 O -0.263 6.263 7 N -0.275 5.275 8 C 0.013 3.987 9 C -0.156 4.156 10 C -0.005 4.005 11 C -0.551 4.551 12 H 0.089 0.911 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.188 1.188 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.115 0.885 22 H 0.260 0.740 23 H 0.195 0.805 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.985 6.460 8.414 12.701 hybrid contribution 0.426 -1.076 0.936 1.489 sum -6.560 5.384 9.350 12.627 Atomic orbital electron populations 1.22885 0.77883 1.03005 1.02052 1.86439 1.22124 1.23189 1.86339 1.19705 0.89071 0.83618 0.88778 1.67353 1.42997 0.98857 1.23577 1.19632 0.84428 0.83755 0.93271 1.84723 1.69665 1.38211 1.33714 1.67900 1.05243 1.35179 1.19131 1.22807 1.00176 0.85200 0.90528 1.21256 0.91859 0.99821 1.02711 1.18570 0.93588 0.89194 0.99189 1.20824 1.32835 1.11064 0.90368 0.91129 1.24949 0.95736 0.96728 0.95550 1.69894 1.40371 1.24319 1.19037 0.86795 0.79109 0.80552 0.82980 1.20074 1.21221 1.18848 0.92687 0.92296 0.88497 0.74019 0.80451 0.94744 0.94799 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.41 101.05 1.05 1.59 15 2 O -0.28 -5.49 9.75 -18.22 -0.18 -5.67 15 3 C 0.38 7.63 7.50 -16.72 -0.13 7.50 15 4 N -0.59 -11.08 9.40 -14.80 -0.14 -11.22 15 5 C 0.49 8.90 8.71 -91.29 -0.80 8.11 15 6 O -0.46 -6.78 13.64 -18.05 -0.25 -7.03 15 7 N -0.55 -10.08 10.46 -14.80 -0.15 -10.23 15 8 C 0.17 3.21 10.97 -17.28 -0.19 3.02 15 9 C -0.15 -3.15 5.12 -104.20 -0.53 -3.68 15 10 C 0.03 0.76 3.96 -29.04 -0.12 0.64 15 11 C -0.51 -14.25 9.65 -34.44 -0.33 -14.58 15 12 H 0.07 2.18 7.98 -52.48 -0.42 1.76 15 13 C 0.07 2.04 5.47 -17.82 -0.10 1.95 15 14 N -0.90 -27.13 13.96 55.43 0.77 -26.36 15 15 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 15 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 15 18 H -0.26 -5.85 6.54 56.52 0.37 -5.48 15 19 H 0.05 0.72 8.12 -51.93 -0.42 0.30 15 20 H 0.06 0.86 8.12 -51.93 -0.42 0.44 15 21 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.40 3.51 9.06 45.56 0.41 3.92 15 23 H 0.18 2.80 8.06 -52.49 -0.42 2.38 15 24 H 0.03 0.75 7.13 -51.93 -0.37 0.38 15 25 H 0.03 0.78 7.20 -51.93 -0.37 0.41 15 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 239.34 15.07 3.61 3.61 Total: -1.00 -32.89 239.34 -3.75 -36.64 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -1.61 Total: -0.40 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.14 Total: 4.56 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.48 Total: -47.81 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.42 Total: -12.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.89 -3.75 -36.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236713.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.265 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds