Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35510 * 117.00276 * 2 1 4 4 N 1.32784 * 120.47404 * 359.97438 * 3 2 1 5 5 C 1.32274 * 120.66169 * 179.72746 * 4 3 2 6 6 O 1.35452 * 119.16579 * 179.97438 * 5 4 3 7 7 N 1.32319 * 121.67054 * 359.97438 * 5 4 3 8 8 C 1.32454 * 120.90675 * 0.02562 * 7 5 4 9 9 C 1.38234 * 119.24218 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.76507 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47148 * 264.95692 * 10 9 8 12 12 H 1.08005 * 120.00109 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99823 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99703 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00003 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46896 * 89.99894 * 15 13 11 17 17 H 1.48500 * 109.46868 * 209.99281 * 15 13 11 18 18 H 1.48496 * 109.47051 * 329.99904 * 15 13 11 19 19 H 1.08997 * 109.46923 * 299.99848 * 1 2 3 20 20 H 1.08992 * 109.46807 * 60.00355 * 1 2 3 21 21 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 22 22 H 0.96702 * 114.00336 * 89.99896 * 6 5 4 23 23 H 1.07994 * 120.38122 * 180.02562 * 8 7 5 24 24 H 1.09007 * 109.46681 * 24.95388 * 10 9 8 25 25 H 1.08999 * 109.47021 * 144.95415 * 10 9 8 26 26 H 0.97001 * 119.99957 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 7 1.3304 2.3270 -0.0005 5 6 1.9271 3.5075 0.0049 6 8 1.1693 4.6302 0.0037 7 7 3.2455 3.6195 0.0115 8 6 4.0196 2.5447 0.0124 9 6 3.4355 1.2918 0.0058 10 6 4.2835 0.0459 0.0072 11 6 4.4707 -0.4358 -1.4084 12 1 4.0203 0.1057 -2.2271 13 6 5.2169 -1.5680 -1.6582 14 7 5.3799 -1.9887 -2.8935 15 14 5.9952 -2.5050 -0.2420 16 1 5.0481 -3.5387 0.2474 17 1 7.2442 -3.1592 -0.7084 18 1 6.3121 -1.5621 0.8606 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 0.9449 4.9543 0.8867 23 1 5.0948 2.6459 0.0182 24 1 5.2558 0.2687 0.4468 25 1 3.7891 -0.7293 0.5925 26 1 5.9046 -2.7854 -3.0693 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236713.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -56.268205 kcal Electronic energy + Delta-G solvation = -13567.752726 eV Core-core repulsion = 11032.645117 eV Total energy + Delta-G solvation = -2535.107609 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.33040 -39.75073 -38.15139 -35.58360 -34.25477 -33.47603 -29.59341 -28.39111 -25.51701 -24.86414 -22.92562 -20.54452 -19.48145 -19.00462 -18.29334 -17.25357 -16.50069 -16.36263 -15.77266 -15.45298 -14.78305 -14.42885 -14.26689 -13.75162 -13.29378 -13.09630 -12.77464 -12.59402 -12.43418 -12.01658 -11.72302 -11.56930 -11.22957 -10.76264 -10.36106 -9.66197 -8.25822 -6.31649 -0.13535 0.06751 1.43635 1.44749 1.56236 1.85070 2.21473 2.40304 2.65077 3.08839 3.16982 3.79312 4.06761 4.32436 4.37054 4.39215 4.44750 4.68142 5.02961 5.21648 5.36780 5.57942 5.71233 6.07243 6.26323 6.58841 6.72249 6.92884 7.31422 8.91115 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.039027 B = 0.009735 C = 0.008673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.277406 B = 2875.401565 C = 3227.519886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.368 3.632 4 N -0.590 5.590 5 C 0.502 3.498 6 O -0.460 6.460 7 N -0.553 5.553 8 C 0.186 3.814 9 C -0.186 4.186 10 C 0.043 3.957 11 C -0.517 4.517 12 H 0.019 0.981 13 C 0.010 3.990 14 N -0.952 5.952 15 Si 0.952 3.048 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.234 1.234 19 H 0.071 0.929 20 H 0.053 0.947 21 H 0.123 0.877 22 H 0.430 0.570 23 H 0.204 0.796 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 6.570 11.222 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.206 6.206 3 C 0.182 3.818 4 N -0.332 5.332 5 C 0.197 3.803 6 O -0.266 6.266 7 N -0.282 5.282 8 C 0.025 3.975 9 C -0.191 4.191 10 C 0.005 3.995 11 C -0.555 4.555 12 H 0.038 0.962 13 C -0.187 4.187 14 N -0.592 5.592 15 Si 0.774 3.226 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.157 1.157 19 H 0.090 0.910 20 H 0.072 0.928 21 H 0.142 0.858 22 H 0.292 0.708 23 H 0.220 0.780 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.036 6.990 10.537 14.470 hybrid contribution 0.277 -1.094 0.217 1.149 sum -6.759 5.896 10.755 14.004 Atomic orbital electron populations 1.23182 0.75508 1.05007 1.02557 1.86398 1.24675 1.23359 1.86164 1.19863 0.89295 0.84199 0.88486 1.67439 1.42736 0.98813 1.24244 1.19943 0.84718 0.84333 0.91335 1.84679 1.69013 1.36784 1.36160 1.68037 1.05471 1.34816 1.19908 1.23197 1.01376 0.84461 0.88416 1.21183 0.92160 0.99819 1.05984 1.18360 0.94999 0.90258 0.95929 1.21045 1.31972 1.10709 0.91752 0.96227 1.25958 0.96388 0.97836 0.98527 1.70065 1.41937 1.25299 1.21900 0.85643 0.77859 0.79332 0.79753 1.19465 1.21120 1.15670 0.91033 0.92841 0.85850 0.70761 0.77972 0.92756 0.94682 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.41 113.37 1.18 2.07 15 2 O -0.30 -11.82 9.75 -88.12 -0.86 -12.68 15 3 C 0.37 14.75 7.50 84.82 0.64 15.39 15 4 N -0.59 -21.54 9.40 -426.39 -4.01 -25.55 15 5 C 0.50 17.12 8.71 180.58 1.57 18.69 15 6 O -0.46 -12.32 13.64 -87.50 -1.19 -13.52 15 7 N -0.55 -19.36 10.46 -313.70 -3.28 -22.64 15 8 C 0.19 6.61 10.97 84.60 0.93 7.54 15 9 C -0.19 -7.61 5.12 -19.59 -0.10 -7.71 15 10 C 0.04 1.93 3.96 29.10 0.12 2.04 15 11 C -0.52 -29.21 9.65 25.60 0.25 -28.96 15 12 H 0.02 1.26 7.98 -2.91 -0.02 1.24 15 13 C 0.01 0.56 5.47 84.66 0.46 1.02 15 14 N -0.95 -59.03 13.96 21.45 0.30 -58.73 15 15 Si 0.95 42.15 27.47 68.60 1.88 44.03 15 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 17 H -0.29 -12.50 7.11 99.48 0.71 -11.79 15 18 H -0.23 -9.16 6.54 99.48 0.65 -8.51 15 19 H 0.07 1.74 8.12 -2.39 -0.02 1.72 15 20 H 0.05 1.53 8.12 -2.39 -0.02 1.51 15 21 H 0.12 2.72 8.14 -2.39 -0.02 2.70 15 22 H 0.43 6.13 9.06 -74.06 -0.67 5.46 15 23 H 0.20 5.92 8.06 -2.91 -0.02 5.90 15 24 H 0.05 2.21 7.13 -2.38 -0.02 2.19 15 25 H 0.03 1.56 7.20 -2.39 -0.02 1.54 15 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 15 Total: -1.00 -71.68 239.34 -1.63 -73.31 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.48 Total: 5.68 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.04 Total: 10.09 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -6.99 Total: -106.92 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -2.05 Total: -26.20 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.03 kcal Total: -71.68 -1.63 -73.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236713.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.047 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds