Wall clock time and date at job start Mon Mar 30 2020 02:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39909 * 109.47231 * 2 1 4 4 C 1.50707 * 109.46995 * 240.00280 * 2 1 3 5 5 H 1.07995 * 119.99757 * 245.01741 * 4 2 1 6 6 C 1.37876 * 119.99796 * 65.01827 * 4 2 1 7 7 N 1.31513 * 120.00356 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99450 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47189 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46767 * 119.99855 * 8 6 4 11 11 H 1.48501 * 109.46999 * 239.99683 * 8 6 4 12 12 C 1.50699 * 109.47498 * 120.00029 * 2 1 3 13 13 C 1.38292 * 119.97240 * 195.69274 * 12 2 1 14 14 C 1.38241 * 120.10961 * 179.72696 * 13 12 2 15 15 C 1.38173 * 120.05413 * 0.54614 * 14 13 12 16 16 C 1.38708 * 119.94292 * 359.73036 * 15 14 13 17 17 O 1.35906 * 120.05246 * 179.97438 * 16 15 14 18 18 C 1.38115 * 119.97011 * 15.96765 * 12 2 1 19 19 H 1.09002 * 109.46833 * 299.99758 * 1 2 3 20 20 H 1.08999 * 109.47223 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47596 * 59.99697 * 1 2 3 22 22 H 0.96997 * 119.99657 * 180.02562 * 7 6 4 23 23 H 1.07999 * 119.94576 * 359.97438 * 13 12 2 24 24 H 1.08003 * 119.97388 * 180.25257 * 14 13 12 25 25 H 1.08002 * 120.02613 * 179.70470 * 15 14 13 26 26 H 0.96695 * 114.00220 * 270.02396 * 17 16 15 27 27 H 1.08004 * 120.02936 * 0.02562 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5847 -1.6333 -1.1335 6 6 1.7866 -0.1820 -2.4801 7 7 1.1135 0.9416 -2.5983 8 14 2.4087 -1.0630 -4.0054 9 1 3.1312 -2.2967 -3.6044 10 1 1.2584 -1.4223 -4.8731 11 1 3.3313 -0.1698 -4.7512 12 6 2.0324 -0.7104 1.2304 13 6 3.3500 -0.5632 1.6235 14 6 3.8125 -1.2091 2.7549 15 6 2.9616 -2.0125 3.4896 16 6 1.6411 -2.1663 3.0941 17 8 0.8024 -2.9564 3.8147 18 6 1.1779 -1.5124 1.9613 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5138 -0.8899 22 1 0.9404 1.3131 -3.4774 23 1 4.0179 0.0605 1.0479 24 1 4.8409 -1.0893 3.0622 25 1 3.3247 -2.5207 4.3707 26 1 0.7891 -3.8799 3.5284 27 1 0.1502 -1.6309 1.6511 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261255532.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:16 Heat of formation + Delta-G solvation = -73.026380 kcal Electronic energy + Delta-G solvation = -13725.377075 eV Core-core repulsion = 11169.622815 eV Total energy + Delta-G solvation = -2555.754259 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.69282 -39.16640 -36.38941 -33.63875 -31.61539 -29.24470 -28.20830 -25.48174 -22.90060 -21.74397 -19.82495 -17.70829 -16.64242 -16.03351 -15.12166 -14.98367 -14.54747 -13.72778 -13.57784 -13.26139 -13.06152 -11.79971 -11.69567 -11.57228 -11.32207 -11.13295 -10.94301 -10.73997 -10.48166 -10.36897 -10.30108 -9.22930 -8.94833 -8.63979 -8.26085 -7.98964 -6.15555 -4.33867 1.79437 1.90183 3.21816 3.29904 3.34170 4.14805 4.33507 4.62028 5.13156 5.37768 5.42207 5.71796 5.93734 6.09457 6.28124 6.45146 6.51091 6.65579 6.77086 6.88919 6.93357 7.19180 7.30998 7.56788 7.73499 7.86885 7.99957 8.01807 8.69973 9.39172 10.87914 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.040281 B = 0.009809 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.945463 B = 2853.823851 C = 2895.922311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.273 3.727 3 F -0.221 7.221 4 C -0.551 4.551 5 H 0.067 0.933 6 C 0.078 3.922 7 N -0.867 5.867 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 C -0.055 4.055 13 C -0.108 4.108 14 C -0.113 4.113 15 C -0.163 4.163 16 C 0.089 3.911 17 O -0.504 6.504 18 C -0.140 4.140 19 H 0.025 0.975 20 H 0.049 0.951 21 H 0.087 0.913 22 H 0.265 0.735 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.383 0.617 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 -5.700 6.987 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.255 3.745 3 F -0.202 7.202 4 C -0.588 4.588 5 H 0.085 0.915 6 C -0.128 4.128 7 N -0.502 5.502 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 C -0.055 4.055 13 C -0.126 4.126 14 C -0.131 4.131 15 C -0.182 4.182 16 C 0.045 3.955 17 O -0.313 6.313 18 C -0.158 4.158 19 H 0.044 0.956 20 H 0.068 0.932 21 H 0.105 0.895 22 H 0.075 0.925 23 H 0.144 0.856 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.237 0.763 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.373 -4.994 7.159 8.836 hybrid contribution 0.425 -0.847 -1.076 1.433 sum 1.798 -5.840 6.083 8.622 Atomic orbital electron populations 1.22287 0.96941 1.00571 1.01572 1.17287 0.91305 0.76072 0.89872 1.92762 1.90395 1.39535 1.97486 1.21315 1.38257 1.09730 0.89515 0.91486 1.25028 0.93957 0.94536 0.99264 1.69990 1.37810 1.18357 1.24029 0.86410 0.78766 0.79766 0.82347 1.19504 1.20682 1.20656 1.20869 0.93403 0.95584 0.95665 1.21102 0.95849 0.99445 0.96208 1.20950 0.99103 0.97554 0.95515 1.21207 0.93031 1.02674 1.01254 1.18445 0.88854 0.96067 0.92102 1.84799 1.64497 1.23421 1.58581 1.21449 1.00880 0.99443 0.94023 0.95627 0.93234 0.89459 0.92537 0.85583 0.86287 0.86423 0.76258 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 7.59 37.16 0.28 -3.44 15 2 C 0.27 6.97 1.02 -92.92 -0.09 6.87 15 3 F -0.22 -6.20 15.70 2.25 0.04 -6.16 15 4 C -0.55 -14.95 8.21 -34.44 -0.28 -15.23 15 5 H 0.07 1.80 7.74 -52.49 -0.41 1.40 15 6 C 0.08 2.12 5.27 -17.82 -0.09 2.03 15 7 N -0.87 -24.54 11.16 55.43 0.62 -23.92 15 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 15 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 12 C -0.05 -1.21 4.87 -104.65 -0.51 -1.72 15 13 C -0.11 -2.19 9.37 -39.56 -0.37 -2.56 15 14 C -0.11 -1.90 10.04 -39.60 -0.40 -2.30 15 15 C -0.16 -2.65 9.99 -39.43 -0.39 -3.04 15 16 C 0.09 1.56 6.71 -39.22 -0.26 1.29 15 17 O -0.50 -7.54 13.50 -19.44 -0.26 -7.80 15 18 C -0.14 -2.77 9.04 -39.44 -0.36 -3.12 15 19 H 0.02 0.55 8.12 -51.93 -0.42 0.13 15 20 H 0.05 1.08 6.81 -51.93 -0.35 0.73 15 21 H 0.09 2.28 6.48 -51.93 -0.34 1.94 15 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.13 2.58 7.98 -52.49 -0.42 2.16 15 24 H 0.12 1.62 8.06 -52.48 -0.42 1.20 15 25 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 26 H 0.38 3.79 9.06 45.56 0.41 4.20 15 27 H 0.13 2.50 5.95 -52.48 -0.31 2.18 15 LS Contribution 239.90 15.07 3.62 3.62 Total: -1.00 -30.38 239.90 -5.31 -35.70 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -1.82 Total: 4.05 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.48 Total: -21.22 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.62 Total: -23.92 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.26 Total: -7.80 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.04 Total: -6.16 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.38 -5.31 -35.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255532.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.330 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds