Wall clock time and date at job start Mon Mar 30 2020 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47176 * 2 1 4 4 C 1.33397 * 125.20209 * 90.33919 * 3 2 1 5 5 C 1.38422 * 114.92275 * 180.20863 * 4 3 2 6 6 C 1.50701 * 122.54297 * 179.75749 * 5 4 3 7 7 H 1.09001 * 109.46309 * 359.74038 * 6 5 4 8 8 C 1.52994 * 109.47234 * 239.73982 * 6 5 4 9 9 C 1.50699 * 109.46833 * 119.73658 * 6 5 4 10 10 H 1.08002 * 120.00516 * 359.97438 * 9 6 5 11 11 C 1.37884 * 119.99783 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99707 * 0.02562 * 11 9 6 13 13 Si 1.86796 * 119.99956 * 180.27458 * 11 9 6 14 14 H 1.48503 * 109.47407 * 269.72718 * 13 11 9 15 15 H 1.48505 * 109.47281 * 29.72474 * 13 11 9 16 16 H 1.48501 * 109.47274 * 149.72572 * 13 11 9 17 17 C 1.33396 * 114.91852 * 359.49378 * 5 4 3 18 18 S 1.75879 * 125.20821 * 270.02845 * 3 2 1 19 19 H 1.08998 * 109.47360 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47118 * 299.99695 * 1 2 3 21 21 H 1.08998 * 109.47389 * 60.00007 * 1 2 3 22 22 H 1.09002 * 109.47118 * 240.00305 * 2 1 3 23 23 H 1.08995 * 109.47001 * 120.00336 * 2 1 3 24 24 H 1.07997 * 122.53749 * 359.96385 * 4 3 2 25 25 H 1.09007 * 109.47093 * 299.99374 * 8 6 5 26 26 H 1.08998 * 109.47717 * 59.99779 * 8 6 5 27 27 H 1.09001 * 109.47144 * 180.02562 * 8 6 5 28 28 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 29 29 H 1.07997 * 125.20132 * 180.25147 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2948 2.1436 1.0900 5 6 2.7431 3.4297 0.8430 6 6 3.0849 4.3953 1.9484 7 1 2.9169 3.9170 2.9133 8 6 2.1985 5.6370 1.8332 9 6 4.5323 4.7988 1.8330 10 1 5.1437 4.3960 1.0390 11 6 5.0765 5.6815 2.7418 12 7 4.3324 6.1708 3.7096 13 14 6.8685 6.1876 2.5943 14 1 7.7132 5.2530 3.3806 15 1 7.2791 6.1451 1.1678 16 1 7.0379 7.5672 3.1172 17 6 2.8548 3.7478 -0.4476 18 16 2.3697 2.3770 -1.4370 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.1634 1.7561 2.0895 25 1 2.3667 6.1152 0.8682 26 1 1.1517 5.3451 1.9166 27 1 2.4461 6.3356 2.6324 28 1 4.7153 6.7915 4.3492 29 1 3.1915 4.7013 -0.8269 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257180.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:29 Heat of formation + Delta-G solvation = -6.110080 kcal Electronic energy + Delta-G solvation = -11587.782321 eV Core-core repulsion = 9601.142946 eV Total energy + Delta-G solvation = -1986.639375 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.46556 -36.11259 -34.37616 -31.94059 -28.79628 -27.21887 -25.59381 -23.86595 -21.27380 -19.66904 -18.27871 -17.74905 -16.69134 -15.79522 -15.02997 -14.86218 -14.57221 -14.28235 -13.62270 -13.45133 -13.27611 -12.95331 -12.84614 -12.48306 -12.32121 -12.26499 -12.12313 -12.01292 -11.56172 -11.18449 -10.99702 -10.47016 -9.34796 -8.99757 -8.09832 -6.23754 0.25312 0.90058 1.19117 1.40644 1.41259 1.51683 2.03865 2.44629 3.17367 3.89178 4.25317 4.45084 4.48540 4.56650 4.75574 4.87671 4.92405 5.03489 5.07933 5.19294 5.21776 5.35721 5.39548 5.48580 5.65187 5.72977 6.04826 6.08089 6.36624 6.84274 7.43748 8.94581 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048195 B = 0.008110 C = 0.007806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.833315 B = 3451.669277 C = 3586.110321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C -0.170 4.170 4 C -0.154 4.154 5 C -0.078 4.078 6 C 0.089 3.911 7 H 0.004 0.996 8 C -0.119 4.119 9 C -0.520 4.520 10 H 0.048 0.952 11 C 0.014 3.986 12 N -0.917 5.917 13 Si 0.955 3.045 14 H -0.276 1.276 15 H -0.270 1.270 16 H -0.281 1.281 17 C -0.230 4.230 18 S 0.084 5.916 19 H 0.082 0.918 20 H 0.048 0.952 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.133 0.867 25 H 0.029 0.971 26 H 0.023 0.977 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -9.720 -7.861 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.287 4.287 4 C -0.184 4.184 5 C -0.090 4.090 6 C 0.069 3.931 7 H 0.022 0.978 8 C -0.177 4.177 9 C -0.558 4.558 10 H 0.067 0.933 11 C -0.185 4.185 12 N -0.557 5.557 13 Si 0.780 3.220 14 H -0.202 1.202 15 H -0.195 1.195 16 H -0.206 1.206 17 C -0.364 4.364 18 S 0.347 5.653 19 H 0.101 0.899 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.150 0.850 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.555 -9.845 -9.299 14.637 hybrid contribution 1.148 1.067 1.833 2.411 sum -4.407 -8.779 -7.466 12.338 Atomic orbital electron populations 1.21763 0.93472 1.02919 1.01925 1.20202 0.96831 0.87848 1.04007 1.24773 1.07450 1.01650 0.94818 1.20138 1.04485 0.94031 0.99784 1.19449 0.98164 0.95733 0.95603 1.17474 0.94453 0.90860 0.90347 0.97801 1.21609 0.95846 0.99772 1.00467 1.21398 0.95656 1.26154 1.12622 0.93322 1.25719 1.01753 0.96084 0.94914 1.70012 1.37096 1.32225 1.16337 0.85606 0.80439 0.77526 0.78406 1.20184 1.19472 1.20645 1.25230 1.12019 1.02911 0.96238 1.83446 1.66474 1.05515 1.09840 0.89907 0.93249 0.92798 0.89549 0.89386 0.84952 0.95204 0.95765 0.92138 0.92881 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.89 71.98 0.71 -2.09 15 2 C -0.05 -1.12 6.43 29.85 0.19 -0.93 15 3 C -0.17 -5.39 5.76 24.59 0.14 -5.24 15 4 C -0.15 -5.94 9.79 21.22 0.21 -5.74 15 5 C -0.08 -3.51 4.62 -20.92 -0.10 -3.60 15 6 C 0.09 4.69 2.55 -12.29 -0.03 4.66 15 7 H 0.00 0.22 8.03 -2.39 -0.02 0.20 15 8 C -0.12 -5.98 8.80 71.98 0.63 -5.35 15 9 C -0.52 -29.30 8.30 25.60 0.21 -29.09 15 10 H 0.05 2.75 7.63 -2.91 -0.02 2.73 15 11 C 0.01 0.77 5.30 84.66 0.45 1.22 15 12 N -0.92 -53.36 11.32 21.45 0.24 -53.11 15 13 Si 0.95 44.18 29.54 68.60 2.03 46.21 15 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 17 C -0.23 -9.37 10.04 66.72 0.67 -8.70 15 18 S 0.08 2.67 23.33 -56.49 -1.32 1.35 15 19 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 20 H 0.05 1.06 8.14 -2.39 -0.02 1.05 15 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.13 4.92 8.06 -2.91 -0.02 4.89 15 25 H 0.03 1.42 7.75 -2.38 -0.02 1.40 15 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 27 H 0.06 3.32 6.07 -2.39 -0.01 3.31 15 28 H 0.26 14.45 8.31 -92.70 -0.77 13.68 15 29 H 0.15 6.19 7.94 -2.91 -0.02 6.17 15 Total: -1.00 -60.62 259.65 5.15 -55.47 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.11 Total: 4.95 kcal Atomic # 6 Polarization: -57.96 SS G_CDS: 3.09 Total: -54.86 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.24 Total: -53.11 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.32 Total: 1.35 kcal Total: -60.62 5.15 -55.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257180.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.359 kcal (2) G-P(sol) polarization free energy of solvation -60.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds