Wall clock time and date at job start Mon Mar 30 2020 02:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47280 * 2 1 4 4 C 1.33387 * 125.20225 * 89.99769 * 3 2 1 5 5 C 1.38423 * 114.92137 * 180.02562 * 4 3 2 6 6 C 1.33391 * 114.92433 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.20501 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47282 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.46735 * 120.00377 * 7 6 5 10 10 C 1.50701 * 109.47003 * 240.00025 * 7 6 5 11 11 H 1.07994 * 120.00154 * 356.79654 * 10 7 6 12 12 C 1.37882 * 119.99515 * 176.79316 * 10 7 6 13 13 N 1.31514 * 120.00167 * 352.40785 * 12 10 7 14 14 Si 1.86797 * 119.99557 * 172.41063 * 12 10 7 15 15 H 1.48496 * 109.47021 * 265.09319 * 14 12 10 16 16 H 1.48499 * 109.46876 * 145.09816 * 14 12 10 17 17 H 1.48496 * 109.47493 * 25.10055 * 14 12 10 18 18 S 1.75884 * 125.20442 * 270.32623 * 3 2 1 19 19 H 1.08993 * 109.47423 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46768 * 299.99842 * 1 2 3 21 21 H 1.09003 * 109.47134 * 59.99190 * 1 2 3 22 22 H 1.09003 * 109.46768 * 240.00158 * 2 1 3 23 23 H 1.08990 * 109.46933 * 120.00470 * 2 1 3 24 24 H 1.08001 * 122.53770 * 0.06648 * 4 3 2 25 25 H 1.07998 * 122.53744 * 179.97438 * 5 4 3 26 26 H 1.08998 * 109.47195 * 59.85009 * 9 7 6 27 27 H 1.09000 * 109.46810 * 179.84724 * 9 7 6 28 28 H 1.08999 * 109.47030 * 299.84872 * 9 7 6 29 29 H 0.96997 * 119.99853 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2887 2.1457 1.0899 5 6 2.7422 3.4300 0.8429 6 6 2.8538 3.7483 -0.4477 7 6 3.3229 5.0790 -0.9770 8 1 3.5570 5.7398 -0.1424 9 6 4.5751 4.8748 -1.8322 10 6 2.2355 5.6967 -1.8179 11 1 1.3187 5.1551 -1.9979 12 6 2.4113 6.9534 -2.3573 13 7 3.4582 7.6738 -2.0187 14 14 1.1622 7.6327 -3.5688 15 1 1.6181 7.3591 -4.9553 16 1 1.0283 9.0985 -3.3720 17 1 -0.1526 6.9807 -3.3422 18 16 2.3627 2.3795 -1.4371 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.1533 1.7597 2.0895 25 1 2.9865 4.1222 1.6351 26 1 4.3420 4.2117 -2.6652 27 1 4.9129 5.8370 -2.2172 28 1 5.3624 4.4304 -1.2233 29 1 3.5816 8.5580 -2.3979 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:34 Heat of formation + Delta-G solvation = -9.237076 kcal Electronic energy + Delta-G solvation = -11539.120901 eV Core-core repulsion = 9552.345930 eV Total energy + Delta-G solvation = -1986.774971 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.98137 -36.47178 -34.41472 -32.58388 -28.55538 -27.23624 -25.32344 -22.96185 -22.48077 -19.58670 -18.54890 -17.31464 -16.63347 -15.96932 -15.00742 -14.92050 -14.51797 -14.23555 -14.01715 -13.45331 -13.15116 -12.86156 -12.82599 -12.46474 -12.41840 -12.26775 -12.04380 -11.94901 -11.51087 -11.35891 -11.07487 -10.50882 -9.21646 -9.11072 -8.16951 -6.28215 0.33279 0.92246 1.37378 1.39196 1.40589 1.50922 2.02397 2.41651 3.12925 3.96602 4.26491 4.32451 4.50848 4.64890 4.73062 4.80786 4.94153 5.01645 5.04032 5.12521 5.13698 5.38573 5.40149 5.52958 5.56782 5.74514 5.86722 5.90308 6.25451 6.78529 7.38844 8.90274 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.043190 B = 0.008956 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.137222 B = 3125.785557 C = 3438.372370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.197 4.197 4 C -0.136 4.136 5 C -0.182 4.182 6 C -0.139 4.139 7 C 0.097 3.903 8 H 0.018 0.982 9 C -0.117 4.117 10 C -0.527 4.527 11 H 0.051 0.949 12 C 0.019 3.981 13 N -0.916 5.916 14 Si 0.952 3.048 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.270 1.270 18 S 0.070 5.930 19 H 0.081 0.919 20 H 0.054 0.946 21 H 0.041 0.959 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.158 0.842 25 H 0.131 0.869 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -13.037 3.418 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.314 4.314 4 C -0.165 4.165 5 C -0.211 4.211 6 C -0.256 4.256 7 C 0.077 3.923 8 H 0.036 0.964 9 C -0.176 4.176 10 C -0.565 4.565 11 H 0.069 0.931 12 C -0.180 4.180 13 N -0.554 5.554 14 Si 0.778 3.222 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.194 1.194 18 S 0.333 5.667 19 H 0.100 0.900 20 H 0.073 0.927 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.117 0.883 24 H 0.175 0.825 25 H 0.149 0.851 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.349 -13.125 1.846 13.670 hybrid contribution -0.237 1.341 0.877 1.620 sum -3.585 -11.783 2.723 12.614 Atomic orbital electron populations 1.21780 0.94057 1.02716 1.01702 1.20132 0.96339 0.88001 1.03936 1.24847 1.09733 1.01844 0.94986 1.20135 1.03086 0.93265 1.00058 1.20275 1.06874 0.98329 0.95624 1.25060 1.04092 0.99986 0.96472 1.17357 0.93825 0.86433 0.94703 0.96422 1.21603 0.97021 1.00321 0.98608 1.21353 1.01977 1.01649 1.31531 0.93106 1.25688 0.97547 0.96770 0.98043 1.70050 1.30268 1.11283 1.43847 0.85625 0.79526 0.77538 0.79561 1.19835 1.20604 1.19444 1.84019 1.65901 1.05428 1.11305 0.89967 0.92693 0.93949 0.90547 0.88332 0.82452 0.85088 0.94766 0.93023 0.94969 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.90 71.98 0.71 -2.24 15 2 C -0.04 -1.00 6.43 29.85 0.19 -0.81 15 3 C -0.20 -6.18 5.76 24.59 0.14 -6.04 15 4 C -0.14 -4.39 10.05 21.22 0.21 -4.18 15 5 C -0.18 -7.21 10.01 21.22 0.21 -7.00 15 6 C -0.14 -6.25 5.04 24.59 0.12 -6.13 15 7 C 0.10 5.07 2.57 -12.28 -0.03 5.04 15 8 H 0.02 1.02 8.08 -2.39 -0.02 1.00 15 9 C -0.12 -5.81 8.93 71.98 0.64 -5.16 15 10 C -0.53 -29.63 8.41 25.60 0.22 -29.41 15 11 H 0.05 2.88 7.75 -2.91 -0.02 2.85 15 12 C 0.02 1.06 5.22 84.66 0.44 1.50 15 13 N -0.92 -53.20 11.92 21.45 0.26 -52.94 15 14 Si 0.95 44.05 29.54 68.60 2.03 46.07 15 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 16 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 18 S 0.07 2.71 23.01 -56.49 -1.30 1.41 15 19 H 0.08 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.05 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.04 0.98 8.14 -2.39 -0.02 0.96 15 22 H 0.08 1.59 8.14 -2.39 -0.02 1.58 15 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 15 24 H 0.16 3.99 8.06 -2.91 -0.02 3.97 15 25 H 0.13 4.98 8.06 -2.91 -0.02 4.96 15 26 H 0.03 1.61 8.01 -2.39 -0.02 1.59 15 27 H 0.05 2.76 6.63 -2.39 -0.02 2.74 15 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 15 Total: -1.00 -61.00 261.86 4.96 -56.05 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.11 Total: 3.84 kcal Atomic # 6 Polarization: -57.29 SS G_CDS: 2.86 Total: -54.43 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.26 Total: -52.94 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.30 Total: 1.41 kcal Total: -61.00 4.96 -56.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.810 kcal (2) G-P(sol) polarization free energy of solvation -61.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds