Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39903 * 109.47429 * 2 1 4 4 C 1.50693 * 109.47383 * 239.99542 * 2 1 3 5 5 H 1.08006 * 120.00406 * 244.98337 * 4 2 1 6 6 C 1.37879 * 119.99918 * 64.98162 * 4 2 1 7 7 N 1.31523 * 120.00048 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00272 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47185 * 59.99522 * 8 6 4 10 10 H 1.48499 * 109.47428 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46857 * 300.00026 * 8 6 4 12 12 C 1.50707 * 109.46892 * 119.99579 * 2 1 3 13 13 C 1.38255 * 119.94256 * 15.33804 * 12 2 1 14 14 C 1.38150 * 120.05497 * 179.72339 * 13 12 2 15 15 C 1.38733 * 119.94212 * 0.54445 * 14 13 12 16 16 O 1.35895 * 120.05808 * 179.74671 * 15 14 13 17 17 C 1.38732 * 119.88869 * 359.72597 * 15 14 13 18 18 C 1.38147 * 119.94320 * 0.02562 * 17 15 14 19 19 H 1.08990 * 109.47535 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46889 * 60.00013 * 1 2 3 21 21 H 1.09007 * 109.46985 * 300.00480 * 1 2 3 22 22 H 0.96994 * 120.00011 * 180.02562 * 7 6 4 23 23 H 1.07999 * 119.97876 * 359.97438 * 13 12 2 24 24 H 1.07998 * 120.03081 * 180.26269 * 14 13 12 25 25 H 0.96702 * 114.00089 * 269.98206 * 16 15 14 26 26 H 1.07994 * 120.02963 * 179.97438 * 17 15 14 27 27 H 1.08003 * 119.97310 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5853 -1.6331 -1.1333 6 6 1.7860 -0.1826 -2.4801 7 7 1.1122 0.9407 -2.5984 8 14 2.4081 -1.0636 -4.0053 9 1 1.8159 -2.4241 -4.0673 10 1 2.0145 -0.2973 -5.2148 11 1 3.8881 -1.1703 -3.9462 12 6 2.0322 -0.7104 1.2306 13 6 1.1730 -1.5026 1.9691 14 6 1.6324 -2.1594 3.0943 15 6 2.9543 -2.0144 3.4894 16 8 3.4074 -2.6553 4.5988 17 6 3.8131 -1.2144 2.7497 18 6 3.3501 -0.5639 1.6224 19 1 -0.3634 -1.0275 0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 0.9387 1.3118 -3.4775 23 1 0.1427 -1.6114 1.6640 24 1 0.9619 -2.7815 3.6686 25 1 3.3147 -2.1436 5.4141 26 1 4.8425 -1.0996 3.0554 27 1 4.0184 0.0587 1.0460 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264195.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -72.876606 kcal Electronic energy + Delta-G solvation = -13662.537721 eV Core-core repulsion = 11106.789957 eV Total energy + Delta-G solvation = -2555.747765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.68886 -39.17176 -36.51500 -33.42893 -31.18871 -30.39882 -27.57287 -25.49339 -22.67883 -21.92744 -19.78070 -18.03464 -16.70536 -15.93027 -15.11710 -14.93317 -14.41526 -13.80162 -13.53119 -13.07428 -12.91555 -12.06289 -11.72799 -11.60584 -11.48403 -11.24963 -10.91126 -10.68168 -10.59536 -10.34844 -9.95374 -9.30394 -8.91865 -8.61407 -8.45220 -7.87025 -6.13990 -4.32284 1.78473 1.89653 3.26360 3.30566 3.33737 4.15435 4.34004 4.59863 5.13917 5.40566 5.41554 5.63096 6.00860 6.06937 6.31502 6.45606 6.50722 6.63230 6.74386 6.87123 6.90072 7.19293 7.32637 7.57061 7.75201 7.87699 7.95746 8.03123 8.71333 9.40728 10.89225 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044828 B = 0.009423 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.455910 B = 2970.592676 C = 3155.637417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.274 3.726 3 F -0.222 7.222 4 C -0.552 4.552 5 H 0.066 0.934 6 C 0.079 3.921 7 N -0.868 5.868 8 Si 0.901 3.099 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.075 4.075 13 C -0.103 4.103 14 C -0.151 4.151 15 C 0.077 3.923 16 O -0.504 6.504 17 C -0.150 4.150 18 C -0.086 4.086 19 H 0.049 0.951 20 H 0.087 0.913 21 H 0.024 0.976 22 H 0.266 0.734 23 H 0.130 0.870 24 H 0.120 0.880 25 H 0.380 0.620 26 H 0.120 0.880 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -3.097 8.829 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.256 3.744 3 F -0.203 7.203 4 C -0.590 4.590 5 H 0.084 0.916 6 C -0.127 4.127 7 N -0.503 5.503 8 Si 0.727 3.273 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.076 4.076 13 C -0.121 4.121 14 C -0.169 4.169 15 C 0.033 3.967 16 O -0.313 6.313 17 C -0.168 4.168 18 C -0.104 4.104 19 H 0.068 0.932 20 H 0.105 0.895 21 H 0.043 0.957 22 H 0.075 0.925 23 H 0.147 0.853 24 H 0.138 0.862 25 H 0.235 0.765 26 H 0.138 0.862 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.792 -3.365 8.285 8.977 hybrid contribution 0.278 -0.070 -0.487 0.565 sum 1.070 -3.435 7.797 8.587 Atomic orbital electron populations 1.22291 0.96991 1.00572 1.01539 1.17264 0.91265 0.76012 0.89903 1.92757 1.90406 1.39627 1.97501 1.21259 1.38337 1.09787 0.89579 0.91592 1.25018 0.93939 0.94526 0.99222 1.69969 1.37738 1.18355 1.24210 0.86523 0.79562 0.79638 0.81533 1.19926 1.21028 1.19915 1.21016 0.93680 0.96786 0.96110 1.21108 1.00244 0.96694 0.94036 1.21296 0.94765 1.01657 0.99196 1.18396 0.92005 0.96321 0.89977 1.84824 1.85006 1.44899 1.16544 1.21322 0.99662 0.98357 0.97489 1.20957 0.95774 0.98383 0.95298 0.93187 0.89468 0.95668 0.92458 0.85253 0.86221 0.76545 0.86199 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 7.57 37.15 0.28 -3.37 15 2 C 0.27 6.93 1.02 -92.93 -0.09 6.84 15 3 F -0.22 -6.16 15.70 2.25 0.04 -6.13 15 4 C -0.55 -15.07 8.20 -34.44 -0.28 -15.36 15 5 H 0.07 1.79 7.74 -52.48 -0.41 1.39 15 6 C 0.08 2.15 5.27 -17.82 -0.09 2.06 15 7 N -0.87 -24.53 11.16 55.43 0.62 -23.91 15 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 15 9 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 12 C -0.08 -1.66 4.87 -104.60 -0.51 -2.17 15 13 C -0.10 -1.96 9.09 -39.61 -0.36 -2.32 15 14 C -0.15 -2.54 9.99 -39.43 -0.39 -2.94 15 15 C 0.08 1.29 6.70 -39.22 -0.26 1.02 15 16 O -0.50 -7.15 13.50 -19.41 -0.26 -7.42 15 17 C -0.15 -2.62 9.99 -39.43 -0.39 -3.02 15 18 C -0.09 -1.75 9.37 -39.60 -0.37 -2.13 15 19 H 0.05 1.07 6.83 -51.93 -0.35 0.71 15 20 H 0.09 2.24 6.48 -51.93 -0.34 1.91 15 21 H 0.02 0.52 8.11 -51.92 -0.42 0.10 15 22 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.13 2.30 5.95 -52.49 -0.31 1.99 15 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 25 H 0.38 3.39 9.06 45.56 0.41 3.80 15 26 H 0.12 1.81 8.06 -52.49 -0.42 1.38 15 27 H 0.13 2.64 7.98 -52.48 -0.42 2.22 15 LS Contribution 239.88 15.07 3.61 3.61 Total: -1.00 -30.35 239.88 -5.31 -35.66 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -1.82 Total: 3.61 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.48 Total: -21.38 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.62 Total: -23.91 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.26 Total: -7.42 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.04 Total: -6.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.35 -5.31 -35.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264195.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.216 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds