Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39903 * 109.47429 * 2 1 4 4 C 1.50693 * 109.47383 * 239.99542 * 2 1 3 5 5 H 1.08006 * 120.00406 * 244.98337 * 4 2 1 6 6 C 1.37879 * 119.99918 * 64.98162 * 4 2 1 7 7 N 1.31523 * 120.00048 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00272 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47185 * 59.99522 * 8 6 4 10 10 H 1.48499 * 109.47428 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46857 * 300.00026 * 8 6 4 12 12 C 1.50707 * 109.46892 * 119.99579 * 2 1 3 13 13 C 1.38255 * 119.94256 * 15.33804 * 12 2 1 14 14 C 1.38150 * 120.05497 * 179.72339 * 13 12 2 15 15 C 1.38733 * 119.94212 * 0.54445 * 14 13 12 16 16 O 1.35895 * 120.05808 * 179.74671 * 15 14 13 17 17 C 1.38732 * 119.88869 * 359.72597 * 15 14 13 18 18 C 1.38147 * 119.94320 * 0.02562 * 17 15 14 19 19 H 1.08990 * 109.47535 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46889 * 60.00013 * 1 2 3 21 21 H 1.09007 * 109.46985 * 300.00480 * 1 2 3 22 22 H 0.96994 * 120.00011 * 180.02562 * 7 6 4 23 23 H 1.07999 * 119.97876 * 359.97438 * 13 12 2 24 24 H 1.07998 * 120.03081 * 180.26269 * 14 13 12 25 25 H 0.96702 * 114.00089 * 269.98206 * 16 15 14 26 26 H 1.07994 * 120.02963 * 179.97438 * 17 15 14 27 27 H 1.08003 * 119.97310 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5853 -1.6331 -1.1333 6 6 1.7860 -0.1826 -2.4801 7 7 1.1122 0.9407 -2.5984 8 14 2.4081 -1.0636 -4.0053 9 1 1.8159 -2.4241 -4.0673 10 1 2.0145 -0.2973 -5.2148 11 1 3.8881 -1.1703 -3.9462 12 6 2.0322 -0.7104 1.2306 13 6 1.1730 -1.5026 1.9691 14 6 1.6324 -2.1594 3.0943 15 6 2.9543 -2.0144 3.4894 16 8 3.4074 -2.6553 4.5988 17 6 3.8131 -1.2144 2.7497 18 6 3.3501 -0.5639 1.6224 19 1 -0.3634 -1.0275 0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 0.9387 1.3118 -3.4775 23 1 0.1427 -1.6114 1.6640 24 1 0.9619 -2.7815 3.6686 25 1 3.3147 -2.1436 5.4141 26 1 4.8425 -1.0996 3.0554 27 1 4.0184 0.0587 1.0460 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261264195.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = -92.623841 kcal Electronic energy + Delta-G solvation = -13663.394026 eV Core-core repulsion = 11106.789957 eV Total energy + Delta-G solvation = -2556.604069 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.74265 -40.53428 -37.84265 -35.34729 -32.97003 -31.83722 -29.17245 -27.50196 -24.29135 -23.36766 -21.47031 -19.29477 -18.73075 -17.62124 -16.59162 -16.49576 -16.06581 -15.50887 -15.24463 -14.91282 -14.34927 -13.70055 -13.58544 -13.22144 -13.18166 -12.86993 -12.76003 -12.51442 -12.43611 -12.24392 -11.32611 -11.13960 -10.87523 -10.65017 -9.86203 -9.36018 -8.18940 -6.45069 0.37017 0.47776 1.40571 1.42239 1.50460 2.36383 2.79224 3.07162 3.36140 3.97629 4.02019 4.14071 4.55103 4.61329 4.63181 4.79044 4.86872 5.00787 5.16345 5.37008 5.48177 5.51046 5.54810 5.88399 5.92094 5.99634 6.09456 6.61394 6.93220 7.31490 8.83072 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044828 B = 0.009423 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.455910 B = 2970.592676 C = 3155.637417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 F -0.244 7.244 4 C -0.569 4.569 5 H 0.058 0.942 6 C 0.031 3.969 7 N -0.898 5.898 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.273 1.273 12 C -0.108 4.108 13 C -0.106 4.106 14 C -0.144 4.144 15 C 0.093 3.907 16 O -0.504 6.504 17 C -0.148 4.148 18 C -0.104 4.104 19 H 0.065 0.935 20 H 0.058 0.942 21 H 0.042 0.958 22 H 0.267 0.733 23 H 0.139 0.861 24 H 0.153 0.847 25 H 0.409 0.591 26 H 0.144 0.856 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -4.729 10.225 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.239 3.761 3 F -0.225 7.225 4 C -0.606 4.606 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.533 5.533 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.198 1.198 12 C -0.109 4.109 13 C -0.124 4.124 14 C -0.163 4.163 15 C 0.049 3.951 16 O -0.316 6.316 17 C -0.167 4.167 18 C -0.122 4.122 19 H 0.084 0.916 20 H 0.077 0.923 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.156 0.844 24 H 0.171 0.829 25 H 0.267 0.733 26 H 0.162 0.838 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.008 -4.995 9.714 10.969 hybrid contribution 0.252 0.402 -0.770 0.905 sum 1.259 -4.593 8.944 10.132 Atomic orbital electron populations 1.22152 0.95999 1.01359 1.00913 1.17497 0.92223 0.75107 0.91233 1.92695 1.90775 1.41355 1.97687 1.21551 1.38322 1.09748 0.91016 0.92330 1.25817 0.94064 0.95209 1.02109 1.70092 1.38779 1.19647 1.24823 0.85548 0.78875 0.78848 0.78019 1.18960 1.20399 1.19800 1.20795 0.94993 0.98887 0.96197 1.21201 1.00319 0.96402 0.94484 1.21586 0.95426 1.01008 0.98248 1.18430 0.91640 0.94658 0.90389 1.84759 1.84704 1.45153 1.17034 1.21503 1.01053 0.97782 0.96329 1.20904 0.95247 0.99429 0.96655 0.91628 0.92325 0.93871 0.92427 0.84376 0.82940 0.73266 0.83826 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.92 7.57 71.98 0.55 -6.37 15 2 C 0.26 13.30 1.02 -12.29 -0.01 13.29 15 3 F -0.24 -14.04 15.70 44.97 0.71 -13.34 15 4 C -0.57 -31.67 8.20 25.60 0.21 -31.46 15 5 H 0.06 3.25 7.74 -2.91 -0.02 3.22 15 6 C 0.03 1.70 5.27 84.65 0.45 2.15 15 7 N -0.90 -51.88 11.16 21.45 0.24 -51.64 15 8 Si 0.96 43.33 29.54 68.60 2.03 45.35 15 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 12 C -0.11 -4.76 4.87 -19.85 -0.10 -4.85 15 13 C -0.11 -3.87 9.09 22.25 0.20 -3.67 15 14 C -0.14 -4.37 9.99 22.37 0.22 -4.15 15 15 C 0.09 2.79 6.70 22.51 0.15 2.94 15 16 O -0.50 -11.95 13.50 -92.37 -1.25 -13.20 15 17 C -0.15 -4.88 9.99 22.37 0.22 -4.66 15 18 C -0.10 -4.25 9.37 22.26 0.21 -4.04 15 19 H 0.06 2.80 6.83 -2.39 -0.02 2.78 15 20 H 0.06 3.08 6.48 -2.38 -0.02 3.07 15 21 H 0.04 1.81 8.11 -2.38 -0.02 1.79 15 22 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 23 H 0.14 4.66 5.95 -2.91 -0.02 4.64 15 24 H 0.15 3.60 8.06 -2.91 -0.02 3.57 15 25 H 0.41 5.21 9.06 -74.06 -0.67 4.54 15 26 H 0.14 3.94 8.06 -2.91 -0.02 3.92 15 27 H 0.11 4.74 7.98 -2.91 -0.02 4.71 15 Total: -1.00 -65.55 239.88 4.34 -61.20 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.52 Total: 12.45 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 2.10 Total: -40.83 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.24 Total: -51.64 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.25 Total: -13.20 kcal Atomic # 9 Polarization: -14.04 SS G_CDS: 0.71 Total: -13.34 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.55 4.34 -61.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264195.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.420 kcal (2) G-P(sol) polarization free energy of solvation -65.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds