Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39896 * 109.47401 * 2 1 4 4 C 1.50705 * 109.47197 * 120.00144 * 2 1 3 5 5 H 1.08006 * 119.99846 * 115.01096 * 4 2 1 6 6 C 1.37878 * 119.99794 * 295.01922 * 4 2 1 7 7 N 1.31515 * 120.00112 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99671 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47174 * 119.99891 * 8 6 4 11 11 H 1.48501 * 109.47157 * 239.99354 * 8 6 4 12 12 C 1.50707 * 109.47089 * 239.99963 * 2 1 3 13 13 C 1.38264 * 119.94473 * 344.10094 * 12 2 1 14 14 C 1.38139 * 120.05371 * 179.72657 * 13 12 2 15 15 C 1.38733 * 119.94563 * 0.56696 * 14 13 12 16 16 O 1.35895 * 120.05611 * 179.68655 * 15 14 13 17 17 C 1.38731 * 119.88836 * 359.70511 * 15 14 13 18 18 C 1.38146 * 119.94235 * 359.97438 * 17 15 14 19 19 H 1.09003 * 109.46895 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.46987 * 299.99552 * 1 2 3 21 21 H 1.09002 * 109.46592 * 60.00143 * 1 2 3 22 22 H 0.96999 * 119.99973 * 180.02562 * 7 6 4 23 23 H 1.08000 * 119.96915 * 359.97189 * 13 12 2 24 24 H 1.08000 * 120.02594 * 180.24901 * 14 13 12 25 25 H 0.96696 * 114.00062 * 270.01951 * 16 15 14 26 26 H 1.07999 * 120.02885 * 179.97438 * 17 15 14 27 27 H 1.08005 * 119.97251 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.5853 -1.6332 1.1334 6 6 1.7861 -0.1825 2.4801 7 7 1.1132 0.9412 2.5983 8 14 2.4081 -1.0636 4.0053 9 1 3.1304 -2.2975 3.6042 10 1 3.3302 -0.1701 4.7516 11 1 1.2579 -1.4236 4.8728 12 6 2.0324 -0.7105 -1.2305 13 6 1.1761 -1.5121 -1.9625 14 6 1.6327 -2.1598 -3.0940 15 6 2.9547 -2.0149 -3.4890 16 8 3.4079 -2.6562 -4.5981 17 6 3.8133 -1.2145 -2.7496 18 6 3.3501 -0.5635 -1.6226 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 0.9402 1.3128 3.4775 23 1 0.1484 -1.6287 -1.6517 24 1 0.9624 -2.7827 -3.6677 25 1 3.7629 -3.5387 -4.4246 26 1 4.8430 -1.1004 -3.0548 27 1 4.0181 0.0600 -1.0468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = -73.048406 kcal Electronic energy + Delta-G solvation = -13663.904864 eV Core-core repulsion = 11108.149650 eV Total energy + Delta-G solvation = -2555.755214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.68670 -39.17033 -36.51225 -33.43530 -31.19101 -30.39939 -27.57310 -25.49956 -22.68051 -21.92751 -19.78460 -18.02777 -16.70749 -15.94724 -15.10892 -14.94951 -14.40316 -13.77966 -13.56404 -13.07347 -12.91459 -12.11114 -11.70118 -11.58823 -11.50788 -11.23305 -10.94702 -10.67226 -10.58850 -10.35137 -9.95192 -9.30375 -8.92587 -8.63146 -8.45169 -7.86169 -6.15011 -4.33340 1.78465 1.89809 3.21981 3.30160 3.34410 4.14725 4.33108 4.61229 5.13011 5.40513 5.41244 5.63210 6.00812 6.06878 6.31550 6.45565 6.50752 6.64060 6.74357 6.87322 6.90184 7.19162 7.32426 7.56645 7.74958 7.87115 7.95965 8.02497 8.70529 9.39725 10.88238 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044412 B = 0.009453 C = 0.008884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.302363 B = 2961.405273 C = 3151.037521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.273 3.727 3 F -0.222 7.222 4 C -0.551 4.551 5 H 0.067 0.933 6 C 0.078 3.922 7 N -0.867 5.867 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 C -0.075 4.075 13 C -0.102 4.102 14 C -0.151 4.151 15 C 0.077 3.923 16 O -0.504 6.504 17 C -0.150 4.150 18 C -0.086 4.086 19 H 0.049 0.951 20 H 0.086 0.914 21 H 0.025 0.975 22 H 0.264 0.736 23 H 0.130 0.870 24 H 0.120 0.880 25 H 0.381 0.619 26 H 0.120 0.880 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -5.694 -7.018 9.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.255 3.745 3 F -0.203 7.203 4 C -0.588 4.588 5 H 0.085 0.915 6 C -0.128 4.128 7 N -0.502 5.502 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 C -0.076 4.076 13 C -0.120 4.120 14 C -0.169 4.169 15 C 0.033 3.967 16 O -0.314 6.314 17 C -0.168 4.168 18 C -0.104 4.104 19 H 0.068 0.932 20 H 0.105 0.895 21 H 0.044 0.956 22 H 0.074 0.926 23 H 0.147 0.853 24 H 0.138 0.862 25 H 0.235 0.765 26 H 0.138 0.862 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.316 -4.993 -7.170 8.836 hybrid contribution 0.520 -0.839 1.061 1.449 sum 1.836 -5.831 -6.109 8.643 Atomic orbital electron populations 1.22294 0.96976 1.00566 1.01566 1.17277 0.91276 0.76040 0.89950 1.92757 1.90397 1.39605 1.97495 1.21332 1.38193 1.09747 0.89553 0.91510 1.25027 0.93964 0.94535 0.99252 1.69989 1.37867 1.18344 1.24003 0.86416 0.78764 0.79764 0.82377 1.19517 1.20678 1.20701 1.21017 0.93660 0.96606 0.96318 1.21098 1.00257 0.96820 0.93875 1.21288 0.95481 1.02421 0.97734 1.18392 0.92333 0.97826 0.88140 1.84806 1.82412 1.33599 1.30535 1.21321 0.99539 1.00133 0.95841 1.20958 0.95801 0.98421 0.95220 0.93188 0.89482 0.95631 0.92561 0.85254 0.86226 0.76461 0.86199 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 7.59 37.16 0.28 -3.38 15 2 C 0.27 6.91 1.02 -92.92 -0.09 6.81 15 3 F -0.22 -6.19 15.69 2.25 0.04 -6.16 15 4 C -0.55 -14.89 8.21 -34.44 -0.28 -15.17 15 5 H 0.07 1.79 7.74 -52.48 -0.41 1.39 15 6 C 0.08 2.11 5.27 -17.82 -0.09 2.02 15 7 N -0.87 -24.45 11.16 55.43 0.62 -23.83 15 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 9 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 12 C -0.08 -1.66 4.87 -104.60 -0.51 -2.17 15 13 C -0.10 -1.96 9.09 -39.61 -0.36 -2.32 15 14 C -0.15 -2.54 9.99 -39.43 -0.39 -2.94 15 15 C 0.08 1.29 6.70 -39.22 -0.26 1.03 15 16 O -0.50 -7.17 13.50 -19.41 -0.26 -7.43 15 17 C -0.15 -2.63 9.99 -39.43 -0.39 -3.02 15 18 C -0.09 -1.75 9.37 -39.60 -0.37 -2.12 15 19 H 0.05 1.06 6.82 -51.93 -0.35 0.71 15 20 H 0.09 2.24 6.48 -51.93 -0.34 1.91 15 21 H 0.02 0.54 8.12 -51.93 -0.42 0.11 15 22 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 23 H 0.13 2.30 5.95 -52.49 -0.31 1.99 15 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 25 H 0.38 3.48 9.06 45.56 0.41 3.89 15 26 H 0.12 1.81 8.06 -52.49 -0.42 1.38 15 27 H 0.13 2.63 7.98 -52.48 -0.42 2.21 15 LS Contribution 239.89 15.07 3.62 3.62 Total: -1.00 -30.26 239.89 -5.31 -35.57 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -1.82 Total: 3.77 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.48 Total: -21.26 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.62 Total: -23.83 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.26 Total: -7.43 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.04 Total: -6.16 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.26 -5.31 -35.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.477 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds