Wall clock time and date at job start Mon Mar 30 2020 02:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39900 * 109.46504 * 2 1 4 4 C 1.50699 * 109.47467 * 119.99874 * 2 1 3 5 5 H 1.07993 * 119.99714 * 119.99750 * 4 2 1 6 6 C 1.37878 * 119.99865 * 300.00559 * 4 2 1 7 7 N 1.31519 * 119.99643 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00180 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47213 * 90.00053 * 8 6 4 10 10 H 1.48503 * 109.46801 * 209.99983 * 8 6 4 11 11 H 1.48496 * 109.47005 * 329.99895 * 8 6 4 12 12 C 1.50694 * 109.46945 * 240.00567 * 2 1 3 13 13 C 1.38169 * 120.02852 * 120.00187 * 12 2 1 14 14 C 1.38242 * 120.05494 * 180.02562 * 13 12 2 15 15 C 1.38295 * 120.11401 * 359.94904 * 14 13 12 16 16 C 1.38122 * 120.05026 * 0.02562 * 15 14 13 17 17 C 1.38711 * 120.03053 * 300.01324 * 12 2 1 18 18 O 1.35906 * 120.04992 * 0.02562 * 17 12 2 19 19 H 1.09000 * 109.46777 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.47344 * 299.99539 * 1 2 3 21 21 H 1.08997 * 109.47293 * 59.99965 * 1 2 3 22 22 H 0.96994 * 119.99594 * 179.97438 * 7 6 4 23 23 H 1.07998 * 119.97347 * 0.02562 * 13 12 2 24 24 H 1.07997 * 119.94707 * 179.97438 * 14 13 12 25 25 H 1.07997 * 119.97026 * 179.74858 * 15 14 13 26 26 H 1.08002 * 120.02294 * 179.97438 * 16 15 14 27 27 H 0.96703 * 113.99508 * 90.00156 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3190 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8020 0.8743 2.6993 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0323 -0.7103 -1.2305 13 6 2.8267 -0.0393 -2.1403 14 6 3.2873 -0.6902 -3.2696 15 6 2.9554 -2.0143 -3.4912 16 6 2.1620 -2.6895 -2.5844 17 6 1.6973 -2.0382 -1.4509 18 8 0.9154 -2.7001 -0.5578 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 1.9033 -0.5280 4.4375 23 1 3.0880 0.9945 -1.9691 24 1 3.9078 -0.1639 -3.9798 25 1 3.3132 -2.5193 -4.3762 26 1 1.9027 -3.7235 -2.7581 27 1 -0.0318 -2.6363 -0.7415 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267358.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:23 Heat of formation + Delta-G solvation = -52.964567 kcal Electronic energy + Delta-G solvation = -14113.081231 eV Core-core repulsion = 11558.196917 eV Total energy + Delta-G solvation = -2554.884314 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.41048 -39.23919 -36.03142 -33.59888 -31.65443 -29.70566 -28.63907 -25.31298 -22.83685 -21.97221 -19.96161 -17.67285 -16.89387 -16.18728 -15.26151 -14.83335 -14.57764 -13.84197 -13.66753 -13.33287 -13.03632 -12.41288 -12.25239 -11.96149 -11.70644 -11.54898 -11.14047 -10.46614 -10.39361 -10.26114 -9.85037 -9.19874 -8.93650 -8.65822 -8.32818 -7.93093 -6.14713 -4.23637 1.75246 1.82713 3.25936 3.40630 3.50664 4.13727 4.38999 4.79946 5.14214 5.27424 5.37213 5.41761 5.72153 5.91221 5.99077 6.11629 6.26191 6.33738 6.40690 6.71461 6.79123 6.88914 6.94512 7.26824 7.32557 7.54920 8.29044 8.39728 8.92070 9.43824 10.96751 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044084 B = 0.012592 C = 0.011408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.993504 B = 2223.104315 C = 2453.726317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.245 3.755 3 F -0.231 7.231 4 C -0.524 4.524 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.874 3.126 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.241 1.241 12 C -0.092 4.092 13 C -0.104 4.104 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.155 4.155 17 C 0.126 3.874 18 O -0.473 6.473 19 H 0.072 0.928 20 H 0.055 0.945 21 H 0.040 0.960 22 H 0.266 0.734 23 H 0.128 0.872 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 -0.237 -11.853 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.226 3.774 3 F -0.212 7.212 4 C -0.562 4.562 5 H 0.105 0.895 6 C -0.121 4.121 7 N -0.521 5.521 8 Si 0.702 3.298 9 H -0.210 1.210 10 H -0.224 1.224 11 H -0.165 1.165 12 C -0.093 4.093 13 C -0.122 4.122 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.174 4.174 17 C 0.081 3.919 18 O -0.283 6.283 19 H 0.091 0.909 20 H 0.074 0.926 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.146 0.854 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.384 -0.355 -11.385 11.637 hybrid contribution -0.928 0.839 0.136 1.259 sum -3.312 0.484 -11.249 11.736 Atomic orbital electron populations 1.22616 0.97073 1.02447 1.00357 1.17673 0.90797 0.75778 0.93127 1.92729 1.90587 1.40501 1.97344 1.21004 1.34179 1.13650 0.87321 0.89492 1.24961 0.95058 0.96465 0.95622 1.69896 1.44219 1.40007 0.97998 0.87249 0.79785 0.84578 0.78147 1.20988 1.22432 1.16454 1.20887 0.98214 0.94044 0.96160 1.21003 0.97066 1.00610 0.93498 1.21030 1.01286 0.95021 0.98044 1.20861 0.99218 0.94764 0.99130 1.21338 1.01511 1.00223 0.94311 1.18150 0.95733 0.89452 0.88515 1.85043 1.19782 1.73199 1.50242 0.90888 0.92611 0.94107 0.92375 0.85434 0.86465 0.86456 0.86012 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 8.21 37.16 0.31 -3.26 15 2 C 0.24 5.94 0.93 -92.93 -0.09 5.85 15 3 F -0.23 -5.83 12.61 2.25 0.03 -5.80 15 4 C -0.52 -15.02 7.83 -34.44 -0.27 -15.29 15 5 H 0.09 2.77 7.79 -52.49 -0.41 2.36 15 6 C 0.08 2.43 5.45 -17.82 -0.10 2.34 15 7 N -0.89 -27.32 13.96 55.43 0.77 -26.55 15 8 Si 0.87 22.08 23.98 -169.99 -4.08 18.01 15 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 15 10 H -0.30 -7.54 7.11 56.52 0.40 -7.13 15 11 H -0.24 -5.97 5.48 56.52 0.31 -5.66 15 12 C -0.09 -1.97 4.74 -104.48 -0.50 -2.47 15 13 C -0.10 -1.97 9.43 -39.61 -0.37 -2.34 15 14 C -0.14 -2.13 10.04 -39.56 -0.40 -2.53 15 15 C -0.12 -1.81 10.04 -39.60 -0.40 -2.21 15 16 C -0.16 -2.55 9.99 -39.44 -0.39 -2.94 15 17 C 0.13 2.47 6.20 -39.22 -0.24 2.23 15 18 O -0.47 -9.23 11.07 -19.44 -0.22 -9.45 15 19 H 0.07 1.39 5.32 -51.93 -0.28 1.12 15 20 H 0.06 1.25 3.27 -51.93 -0.17 1.08 15 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.27 7.68 8.31 -40.82 -0.34 7.34 15 23 H 0.13 2.37 7.16 -52.49 -0.38 1.99 15 24 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 25 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 27 H 0.38 5.46 7.57 45.56 0.35 5.80 15 LS Contribution 225.67 15.07 3.40 3.40 Total: -1.00 -32.58 225.67 -4.36 -36.93 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -1.82 Total: 4.08 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.45 Total: -20.62 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.22 Total: -9.45 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.03 Total: -5.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.08 Total: 18.01 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.58 -4.36 -36.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267358.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.032 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds