Wall clock time and date at job start Mon Mar 30 2020 02:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39900 * 109.46504 * 2 1 4 4 C 1.50699 * 109.47467 * 119.99874 * 2 1 3 5 5 H 1.07993 * 119.99714 * 119.99750 * 4 2 1 6 6 C 1.37878 * 119.99865 * 300.00559 * 4 2 1 7 7 N 1.31519 * 119.99643 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00180 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47213 * 90.00053 * 8 6 4 10 10 H 1.48503 * 109.46801 * 209.99983 * 8 6 4 11 11 H 1.48496 * 109.47005 * 329.99895 * 8 6 4 12 12 C 1.50694 * 109.46945 * 240.00567 * 2 1 3 13 13 C 1.38169 * 120.02852 * 120.00187 * 12 2 1 14 14 C 1.38242 * 120.05494 * 180.02562 * 13 12 2 15 15 C 1.38295 * 120.11401 * 359.94904 * 14 13 12 16 16 C 1.38122 * 120.05026 * 0.02562 * 15 14 13 17 17 C 1.38711 * 120.03053 * 300.01324 * 12 2 1 18 18 O 1.35906 * 120.04992 * 0.02562 * 17 12 2 19 19 H 1.09000 * 109.46777 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.47344 * 299.99539 * 1 2 3 21 21 H 1.08997 * 109.47293 * 59.99965 * 1 2 3 22 22 H 0.96994 * 119.99594 * 179.97438 * 7 6 4 23 23 H 1.07998 * 119.97347 * 0.02562 * 13 12 2 24 24 H 1.07997 * 119.94707 * 179.97438 * 14 13 12 25 25 H 1.07997 * 119.97026 * 179.74858 * 15 14 13 26 26 H 1.08002 * 120.02294 * 179.97438 * 16 15 14 27 27 H 0.96703 * 113.99508 * 90.00156 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3190 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8020 0.8743 2.6993 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0323 -0.7103 -1.2305 13 6 2.8267 -0.0393 -2.1403 14 6 3.2873 -0.6902 -3.2696 15 6 2.9554 -2.0143 -3.4912 16 6 2.1620 -2.6895 -2.5844 17 6 1.6973 -2.0382 -1.4509 18 8 0.9154 -2.7001 -0.5578 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 1.9033 -0.5280 4.4375 23 1 3.0880 0.9945 -1.9691 24 1 3.9078 -0.1639 -3.9798 25 1 3.3132 -2.5193 -4.3762 26 1 1.9027 -3.7235 -2.7581 27 1 -0.0318 -2.6363 -0.7415 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267358.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:23 Heat of formation + Delta-G solvation = -76.590295 kcal Electronic energy + Delta-G solvation = -14114.105719 eV Core-core repulsion = 11558.196917 eV Total energy + Delta-G solvation = -2555.908802 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.35143 -40.63794 -37.42707 -35.54575 -33.57385 -31.12538 -30.09447 -27.36752 -24.43155 -23.33357 -21.62042 -19.16123 -18.94441 -17.83274 -16.99921 -16.40249 -16.07813 -15.52268 -15.32576 -15.01830 -14.69937 -14.49029 -14.06919 -13.43732 -13.13131 -13.09677 -12.54132 -12.47038 -12.26156 -12.04450 -11.37706 -11.21697 -10.84815 -10.74094 -9.70165 -9.34782 -8.39277 -6.52233 0.42585 0.47347 1.25241 1.36079 1.49867 2.27511 2.80372 2.97357 3.46565 3.73705 4.02525 4.16128 4.23390 4.43380 4.54436 4.58484 4.74499 4.91825 5.06405 5.13150 5.27517 5.36497 5.51657 5.61443 5.82230 6.04533 6.20017 6.57371 7.02243 7.18960 8.76461 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044084 B = 0.012592 C = 0.011408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.993504 B = 2223.104315 C = 2453.726317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.238 3.762 3 F -0.239 7.239 4 C -0.523 4.523 5 H 0.038 0.962 6 C 0.026 3.974 7 N -0.935 5.935 8 Si 0.936 3.064 9 H -0.261 1.261 10 H -0.300 1.300 11 H -0.233 1.233 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.129 4.129 15 C -0.106 4.106 16 C -0.155 4.155 17 C 0.108 3.892 18 O -0.496 6.496 19 H 0.087 0.913 20 H 0.044 0.956 21 H 0.070 0.930 22 H 0.269 0.731 23 H 0.122 0.878 24 H 0.154 0.846 25 H 0.162 0.838 26 H 0.147 0.853 27 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 0.017 -14.460 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.220 3.780 3 F -0.220 7.220 4 C -0.561 4.561 5 H 0.056 0.944 6 C -0.173 4.173 7 N -0.573 5.573 8 Si 0.761 3.239 9 H -0.187 1.187 10 H -0.228 1.228 11 H -0.156 1.156 12 C -0.133 4.133 13 C -0.139 4.139 14 C -0.146 4.146 15 C -0.124 4.124 16 C -0.173 4.173 17 C 0.063 3.937 18 O -0.309 6.309 19 H 0.106 0.894 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.140 0.860 24 H 0.172 0.828 25 H 0.180 0.820 26 H 0.165 0.835 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.029 -0.105 -14.019 14.343 hybrid contribution -0.629 0.652 0.842 1.237 sum -3.658 0.546 -13.176 13.685 Atomic orbital electron populations 1.22551 0.94717 1.03832 1.01132 1.17688 0.92614 0.75005 0.92706 1.92684 1.90956 1.40970 1.97412 1.21140 1.32937 1.12319 0.89661 0.94397 1.25822 0.96596 0.99642 0.95237 1.70038 1.46449 1.42174 0.98679 0.86249 0.78982 0.80717 0.77913 1.18699 1.22805 1.15599 1.20808 1.01010 0.95231 0.96233 1.21133 0.97414 1.00707 0.94611 1.21427 1.00500 0.95553 0.97147 1.21393 0.97046 0.94310 0.99670 1.21657 1.01011 1.01373 0.93261 1.18415 0.96502 0.89146 0.89634 1.84987 1.21360 1.73232 1.51275 0.89404 0.93783 0.91075 0.92207 0.85997 0.82838 0.82024 0.83490 0.74816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.80 8.21 71.98 0.59 -6.21 15 2 C 0.24 11.57 0.93 -12.29 -0.01 11.56 15 3 F -0.24 -12.05 12.61 44.97 0.57 -11.48 15 4 C -0.52 -30.92 7.83 25.60 0.20 -30.72 15 5 H 0.04 2.55 7.79 -2.91 -0.02 2.53 15 6 C 0.03 1.58 5.45 84.65 0.46 2.04 15 7 N -0.94 -59.77 13.96 21.45 0.30 -59.47 15 8 Si 0.94 46.02 23.98 68.60 1.65 47.67 15 9 H -0.26 -11.83 6.87 99.48 0.68 -11.14 15 10 H -0.30 -14.77 7.11 99.48 0.71 -14.06 15 11 H -0.23 -11.06 5.48 99.48 0.54 -10.51 15 12 C -0.13 -5.59 4.74 -19.77 -0.09 -5.68 15 13 C -0.12 -4.41 9.43 22.25 0.21 -4.21 15 14 C -0.13 -3.57 10.04 22.28 0.22 -3.35 15 15 C -0.11 -2.69 10.04 22.26 0.22 -2.46 15 16 C -0.15 -4.62 9.99 22.36 0.22 -4.39 15 17 C 0.11 4.11 6.20 22.50 0.14 4.25 15 18 O -0.50 -19.38 11.07 -92.49 -1.02 -20.40 15 19 H 0.09 3.26 5.32 -2.39 -0.01 3.25 15 20 H 0.04 1.89 3.27 -2.38 -0.01 1.88 15 21 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 22 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 23 H 0.12 4.46 7.16 -2.91 -0.02 4.44 15 24 H 0.15 3.12 8.06 -2.91 -0.02 3.10 15 25 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 26 H 0.15 3.58 8.06 -2.91 -0.02 3.55 15 27 H 0.39 11.21 7.57 -74.06 -0.56 10.65 15 Total: -1.00 -72.91 225.67 4.10 -68.81 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.45 Total: 14.05 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 2.17 Total: -39.17 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.02 Total: -20.40 kcal Atomic # 9 Polarization: -12.05 SS G_CDS: 0.57 Total: -11.48 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.65 Total: 47.67 kcal Total: -72.91 4.10 -68.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267358.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.783 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds