Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35912 * 117.00097 * 2 1 4 4 C 1.39117 * 120.85885 * 0.04925 * 3 2 1 5 5 N 1.32273 * 119.03397 * 179.97438 * 4 3 2 6 6 C 1.31804 * 120.87572 * 359.97438 * 5 4 3 7 7 N 1.31769 * 121.89023 * 359.97438 * 6 5 4 8 8 C 1.32304 * 120.87714 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.48023 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47383 * 195.00298 * 9 8 7 11 11 O 1.42900 * 109.47303 * 315.00302 * 9 8 7 12 12 C 1.50697 * 109.47252 * 75.00533 * 9 8 7 13 13 H 1.07997 * 120.00171 * 359.97438 * 12 9 8 14 14 C 1.37882 * 120.00128 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00063 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99850 * 359.97438 * 14 12 9 17 17 H 1.48504 * 109.46813 * 89.99986 * 16 14 12 18 18 H 1.48494 * 109.47135 * 209.99570 * 16 14 12 19 19 H 1.48502 * 109.47148 * 329.99994 * 16 14 12 20 20 H 1.08999 * 109.47464 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46602 * 299.99794 * 1 2 3 22 22 H 1.08997 * 109.47167 * 59.99680 * 1 2 3 23 23 H 1.07994 * 120.47929 * 359.97438 * 4 3 2 24 24 H 1.08005 * 119.05251 * 180.02562 * 6 5 4 25 25 H 0.96698 * 114.00504 * 59.99901 * 11 9 8 26 26 H 0.97003 * 120.00105 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3060 2.3890 0.0010 5 7 1.9438 3.5478 0.0015 6 6 3.2610 3.5949 0.0015 7 7 3.9967 2.5017 0.0016 8 6 3.4337 1.3045 0.0011 9 6 4.2837 0.0601 0.0018 10 1 3.6693 -0.7999 -0.2648 11 8 5.3399 0.2042 -0.9500 12 6 4.8695 -0.1474 1.3746 13 1 4.6488 0.5521 2.1673 14 6 5.6874 -1.2303 1.6187 15 7 6.1990 -1.4111 2.8167 16 14 6.0687 -2.4406 0.2479 17 1 7.2870 -1.9991 -0.4775 18 1 6.2987 -3.7883 0.8272 19 1 4.9235 -2.4963 -0.6960 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.2265 2.3577 0.0014 24 1 3.7514 4.5572 0.0024 25 1 5.9280 0.9515 -0.7749 26 1 6.7741 -2.1731 2.9885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261275431.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -34.739377 kcal Electronic energy + Delta-G solvation = -13813.162801 eV Core-core repulsion = 11278.988752 eV Total energy + Delta-G solvation = -2534.174049 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.87414 -38.17896 -36.23027 -33.03315 -32.31610 -30.90038 -27.74988 -27.48954 -24.23858 -23.27554 -21.21430 -17.92609 -17.74338 -17.34657 -16.55905 -15.73988 -14.88342 -14.54287 -13.97503 -13.85632 -13.72084 -13.02726 -12.87365 -11.98650 -11.81078 -11.47688 -11.25127 -10.88709 -10.86306 -10.24024 -10.01136 -9.50139 -8.99106 -8.68672 -8.50921 -8.16359 -6.16538 -4.29144 1.35738 1.46629 3.35844 3.44268 3.47538 3.59764 4.18421 4.46607 4.47457 4.56690 4.72032 4.97766 5.15601 5.17730 5.27194 5.50427 5.71873 5.92723 6.05650 6.55367 7.01682 7.23860 7.40350 7.54623 8.22786 8.52460 8.74848 8.93488 9.43018 10.93435 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035334 B = 0.011621 C = 0.010205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.247805 B = 2408.842311 C = 2743.138867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.293 6.293 3 C 0.025 3.975 4 C 0.053 3.947 5 N -0.506 5.506 6 C 0.248 3.752 7 N -0.475 5.475 8 C 0.173 3.827 9 C 0.242 3.758 10 H 0.089 0.911 11 O -0.578 6.578 12 C -0.547 4.547 13 H 0.074 0.926 14 C 0.086 3.914 15 N -0.887 5.887 16 Si 0.912 3.088 17 H -0.275 1.275 18 H -0.303 1.303 19 H -0.266 1.266 20 H 0.103 0.897 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.162 0.838 24 H 0.193 0.807 25 H 0.372 0.628 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 4.314 -6.168 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.203 6.203 3 C -0.026 4.026 4 C -0.112 4.112 5 N -0.222 5.222 6 C -0.039 4.039 7 N -0.189 5.189 8 C 0.024 3.976 9 C 0.183 3.817 10 H 0.106 0.894 11 O -0.384 6.384 12 C -0.585 4.585 13 H 0.092 0.908 14 C -0.119 4.119 15 N -0.524 5.524 16 Si 0.741 3.259 17 H -0.201 1.201 18 H -0.231 1.231 19 H -0.191 1.191 20 H 0.121 0.879 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.179 0.821 24 H 0.209 0.791 25 H 0.220 0.780 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.570 4.361 -6.320 12.269 hybrid contribution -0.305 -0.645 -0.130 0.725 sum -9.875 3.716 -6.450 12.366 Atomic orbital electron populations 1.23113 0.78854 1.04327 1.01001 1.86223 1.20798 1.25041 1.88230 1.20735 0.94628 0.86525 1.00676 1.23175 1.00558 0.87342 1.00133 1.68148 1.11902 1.28381 1.13742 1.24730 0.86281 0.97509 0.95417 1.68232 1.40663 0.97945 1.12082 1.22755 0.89134 0.95997 0.89761 1.19017 0.84820 0.87466 0.90350 0.89370 1.86358 1.43353 1.54009 1.54685 1.21193 1.31061 1.11931 0.94328 0.90836 1.24951 0.94091 0.97155 0.95746 1.69932 1.31690 1.29674 1.21096 0.86262 0.79989 0.78278 0.81323 1.20124 1.23061 1.19085 0.87860 0.92618 0.92858 0.82052 0.79091 0.77960 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.84 101.05 0.99 1.25 15 2 O -0.29 -5.17 9.47 -19.46 -0.18 -5.35 15 3 C 0.02 0.47 6.70 -38.94 -0.26 0.21 15 4 C 0.05 0.86 10.31 -17.04 -0.18 0.69 15 5 N -0.51 -8.64 10.43 -14.47 -0.15 -8.79 15 6 C 0.25 4.32 12.28 -92.17 -1.13 3.19 15 7 N -0.47 -9.79 9.93 -10.69 -0.11 -9.89 15 8 C 0.17 3.80 5.74 -82.08 -0.47 3.33 15 9 C 0.24 5.97 2.58 -29.04 -0.07 5.89 15 10 H 0.09 2.23 6.30 -51.93 -0.33 1.90 15 11 O -0.58 -13.82 11.00 -35.23 -0.39 -14.21 15 12 C -0.55 -15.57 9.33 -34.44 -0.32 -15.89 15 13 H 0.07 2.30 7.98 -52.49 -0.42 1.88 15 14 C 0.09 2.48 5.47 -17.82 -0.10 2.39 15 15 N -0.89 -26.98 13.96 55.43 0.77 -26.21 15 16 Si 0.91 23.08 26.18 -169.99 -4.45 18.63 15 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 18 H -0.30 -7.52 7.11 56.52 0.40 -7.12 15 19 H -0.27 -6.63 6.54 56.52 0.37 -6.26 15 20 H 0.10 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.06 0.55 7.71 -51.93 -0.40 0.15 15 22 H 0.05 0.49 7.71 -51.93 -0.40 0.09 15 23 H 0.16 1.97 6.47 -52.49 -0.34 1.63 15 24 H 0.19 2.57 8.06 -52.48 -0.42 2.14 15 25 H 0.37 8.20 8.68 45.56 0.40 8.60 15 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 LS Contribution 233.33 15.07 3.52 3.52 Total: -1.00 -32.98 233.33 -4.03 -37.01 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -1.50 Total: 4.25 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.54 Total: 1.06 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.52 Total: -44.90 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.57 Total: -19.56 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.45 Total: 18.63 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.98 -4.03 -37.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275431.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.269 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds