Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35912 * 117.00097 * 2 1 4 4 C 1.39117 * 120.85885 * 0.04925 * 3 2 1 5 5 N 1.32273 * 119.03397 * 179.97438 * 4 3 2 6 6 C 1.31804 * 120.87572 * 359.97438 * 5 4 3 7 7 N 1.31769 * 121.89023 * 359.97438 * 6 5 4 8 8 C 1.32304 * 120.87714 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.48023 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47383 * 195.00298 * 9 8 7 11 11 O 1.42900 * 109.47303 * 315.00302 * 9 8 7 12 12 C 1.50697 * 109.47252 * 75.00533 * 9 8 7 13 13 H 1.07997 * 120.00171 * 359.97438 * 12 9 8 14 14 C 1.37882 * 120.00128 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00063 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99850 * 359.97438 * 14 12 9 17 17 H 1.48504 * 109.46813 * 89.99986 * 16 14 12 18 18 H 1.48494 * 109.47135 * 209.99570 * 16 14 12 19 19 H 1.48502 * 109.47148 * 329.99994 * 16 14 12 20 20 H 1.08999 * 109.47464 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46602 * 299.99794 * 1 2 3 22 22 H 1.08997 * 109.47167 * 59.99680 * 1 2 3 23 23 H 1.07994 * 120.47929 * 359.97438 * 4 3 2 24 24 H 1.08005 * 119.05251 * 180.02562 * 6 5 4 25 25 H 0.96698 * 114.00504 * 59.99901 * 11 9 8 26 26 H 0.97003 * 120.00105 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3060 2.3890 0.0010 5 7 1.9438 3.5478 0.0015 6 6 3.2610 3.5949 0.0015 7 7 3.9967 2.5017 0.0016 8 6 3.4337 1.3045 0.0011 9 6 4.2837 0.0601 0.0018 10 1 3.6693 -0.7999 -0.2648 11 8 5.3399 0.2042 -0.9500 12 6 4.8695 -0.1474 1.3746 13 1 4.6488 0.5521 2.1673 14 6 5.6874 -1.2303 1.6187 15 7 6.1990 -1.4111 2.8167 16 14 6.0687 -2.4406 0.2479 17 1 7.2870 -1.9991 -0.4775 18 1 6.2987 -3.7883 0.8272 19 1 4.9235 -2.4963 -0.6960 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.2265 2.3577 0.0014 24 1 3.7514 4.5572 0.0024 25 1 5.9280 0.9515 -0.7749 26 1 6.7741 -2.1731 2.9885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261275431.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -61.452388 kcal Electronic energy + Delta-G solvation = -13814.321164 eV Core-core repulsion = 11278.988752 eV Total energy + Delta-G solvation = -2535.332412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.26422 -39.44260 -38.08110 -34.54942 -34.50184 -32.32420 -29.65033 -28.51322 -26.00259 -24.59320 -22.98642 -19.72760 -19.05611 -18.95352 -18.13815 -17.04032 -16.84051 -16.16472 -15.33935 -15.23352 -15.20876 -14.89642 -14.55568 -13.84361 -13.24833 -13.04019 -12.87315 -12.45444 -12.26623 -11.99195 -11.72457 -11.49132 -10.90447 -10.85910 -10.04978 -9.58674 -8.40069 -6.56660 -0.02092 0.01765 1.40502 1.44612 1.58484 2.19799 2.36016 2.75621 2.92789 3.20191 3.26385 3.30013 3.80019 3.96668 4.33576 4.34567 4.39999 4.60003 4.74685 5.13501 5.28203 5.32093 5.84188 6.02486 6.22893 6.51145 6.97290 7.12228 7.20535 8.74227 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035334 B = 0.011621 C = 0.010205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.247805 B = 2408.842311 C = 2743.138867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.321 6.321 3 C 0.021 3.979 4 C 0.071 3.929 5 N -0.502 5.502 6 C 0.243 3.757 7 N -0.497 5.497 8 C 0.129 3.871 9 C 0.250 3.750 10 H 0.082 0.918 11 O -0.578 6.578 12 C -0.549 4.549 13 H 0.030 0.970 14 C 0.035 3.965 15 N -0.932 5.932 16 Si 0.975 3.025 17 H -0.271 1.271 18 H -0.294 1.294 19 H -0.260 1.260 20 H 0.122 0.878 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.208 0.792 24 H 0.227 0.773 25 H 0.379 0.621 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 4.713 -7.533 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.232 6.232 3 C -0.030 4.030 4 C -0.096 4.096 5 N -0.217 5.217 6 C -0.044 4.044 7 N -0.212 5.212 8 C -0.019 4.019 9 C 0.192 3.808 10 H 0.099 0.901 11 O -0.386 6.386 12 C -0.587 4.587 13 H 0.048 0.952 14 C -0.165 4.165 15 N -0.570 5.570 16 Si 0.801 3.199 17 H -0.197 1.197 18 H -0.221 1.221 19 H -0.184 1.184 20 H 0.141 0.859 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.225 0.775 24 H 0.243 0.757 25 H 0.228 0.772 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.275 4.763 -7.688 14.453 hybrid contribution 0.090 -0.669 0.332 0.752 sum -11.185 4.094 -7.356 13.999 Atomic orbital electron populations 1.23556 0.75551 1.06438 1.02958 1.86185 1.24235 1.24728 1.88035 1.20722 0.93796 0.88064 1.00393 1.23854 1.02379 0.85893 0.97429 1.68280 1.11679 1.28577 1.13146 1.25412 0.86650 0.97829 0.94478 1.68129 1.41963 0.98355 1.12792 1.22308 0.90603 0.95508 0.93480 1.18622 0.84937 0.89301 0.87943 0.90077 1.86284 1.43608 1.54529 1.54135 1.21345 1.31146 1.10792 0.95373 0.95164 1.25777 0.93952 0.98963 0.97850 1.70042 1.33021 1.30829 1.23135 0.85290 0.79900 0.76283 0.78467 1.19678 1.22142 1.18396 0.85946 0.91067 0.90284 0.77541 0.75678 0.77217 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.29 15 2 O -0.32 -10.82 9.47 -92.56 -0.88 -11.69 15 3 C 0.02 0.77 6.70 22.68 0.15 0.92 15 4 C 0.07 2.09 10.31 84.84 0.87 2.96 15 5 N -0.50 -15.68 10.43 -199.68 -2.08 -17.76 15 6 C 0.24 8.03 12.28 180.89 2.22 10.25 15 7 N -0.50 -20.34 9.93 -187.74 -1.86 -22.21 15 8 C 0.13 5.66 5.74 42.69 0.24 5.91 15 9 C 0.25 12.49 2.58 29.10 0.07 12.56 15 10 H 0.08 4.12 6.30 -2.39 -0.02 4.10 15 11 O -0.58 -27.58 11.00 -148.98 -1.64 -29.22 15 12 C -0.55 -32.15 9.33 25.60 0.24 -31.91 15 13 H 0.03 1.98 7.98 -2.91 -0.02 1.96 15 14 C 0.04 2.09 5.47 84.66 0.46 2.55 15 15 N -0.93 -58.09 13.96 21.45 0.30 -57.79 15 16 Si 0.97 47.81 26.18 68.60 1.80 49.60 15 17 H -0.27 -13.05 7.11 99.48 0.71 -12.34 15 18 H -0.29 -13.89 7.11 99.48 0.71 -13.19 15 19 H -0.26 -12.36 6.54 99.48 0.65 -11.71 15 20 H 0.12 1.87 8.14 -2.39 -0.02 1.85 15 21 H 0.07 1.15 7.71 -2.39 -0.02 1.13 15 22 H 0.08 1.12 7.71 -2.39 -0.02 1.10 15 23 H 0.21 3.99 6.47 -2.91 -0.02 3.97 15 24 H 0.23 5.50 8.06 -2.91 -0.02 5.47 15 25 H 0.38 16.81 8.68 -74.06 -0.64 16.17 15 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 Total: -1.00 -72.60 233.33 1.53 -71.07 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.51 Total: 13.48 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.38 Total: 4.52 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -3.65 Total: -97.76 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -2.52 Total: -40.91 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.80 Total: 49.60 kcal Total: -72.60 1.53 -71.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275431.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.613 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds