Wall clock time and date at job start Mon Mar 30 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35928 * 116.99490 * 2 1 4 4 C 1.39113 * 120.85932 * 0.22514 * 3 2 1 5 5 N 1.32278 * 119.03021 * 180.27165 * 4 3 2 6 6 C 1.31798 * 120.87875 * 359.75271 * 5 4 3 7 7 N 1.31767 * 121.89004 * 359.97438 * 6 5 4 8 8 C 1.32309 * 120.87599 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.48070 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47210 * 164.99849 * 9 8 7 11 11 O 1.42903 * 109.47593 * 44.99547 * 9 8 7 12 12 C 1.50702 * 109.46869 * 284.99556 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 9 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 9 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 H 1.09004 * 109.47050 * 299.99514 * 1 2 3 21 21 H 1.09003 * 109.47446 * 59.99842 * 1 2 3 22 22 H 1.08994 * 109.47148 * 179.97438 * 1 2 3 23 23 H 1.07993 * 120.48279 * 359.97438 * 4 3 2 24 24 H 1.07997 * 119.05394 * 180.02562 * 6 5 4 25 25 H 0.96697 * 113.99557 * 300.00823 * 11 9 8 26 26 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.3058 2.3890 0.0047 5 7 1.9435 3.5479 -0.0010 6 6 3.2606 3.5952 -0.0060 7 7 3.9964 2.5021 -0.0052 8 6 3.4335 1.3047 0.0003 9 6 4.2837 0.0604 0.0007 10 1 3.6700 -0.7988 0.2714 11 8 5.3427 0.2071 0.9489 12 6 4.8654 -0.1508 -1.3734 13 1 4.6422 0.5465 -2.1674 14 6 5.6877 -1.2309 -1.6154 15 7 6.1997 -1.4122 -2.8131 16 14 6.0742 -2.4366 -0.2420 17 1 5.0624 -3.5236 -0.2383 18 1 7.4238 -3.0172 -0.4584 19 1 6.0438 -1.7275 1.0624 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2263 2.3577 0.0080 24 1 3.7509 4.5575 -0.0101 25 1 5.9301 0.9541 0.7699 26 1 6.7779 -2.1722 -2.9834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261275433.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:01 Heat of formation + Delta-G solvation = -31.796224 kcal Electronic energy + Delta-G solvation = -13816.008918 eV Core-core repulsion = 11281.962495 eV Total energy + Delta-G solvation = -2534.046424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.86663 -38.17361 -36.20071 -33.01912 -32.28322 -30.89157 -27.71823 -27.48140 -24.22703 -23.26946 -21.19211 -17.91010 -17.73477 -17.32092 -16.54692 -15.73463 -14.80653 -14.57926 -13.98170 -13.86849 -13.70431 -13.00099 -12.86157 -11.98187 -11.81614 -11.45250 -11.20913 -10.87344 -10.82100 -10.40636 -10.03999 -9.22265 -8.95934 -8.63620 -8.36825 -8.14063 -6.14702 -4.26585 1.36361 1.47471 3.36285 3.39318 3.48265 3.73965 4.19305 4.47964 4.51552 4.58060 4.72705 4.98450 5.16913 5.21262 5.27637 5.50630 5.73022 5.94346 6.06678 6.56112 7.02280 7.24392 7.42659 7.55385 8.25159 8.53305 8.77684 8.97070 9.46078 10.95500 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.011620 C = 0.010204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.859494 B = 2409.127493 C = 2743.313591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.293 6.293 3 C 0.024 3.976 4 C 0.053 3.947 5 N -0.507 5.507 6 C 0.248 3.752 7 N -0.474 5.474 8 C 0.173 3.827 9 C 0.244 3.756 10 H 0.083 0.917 11 O -0.572 6.572 12 C -0.549 4.549 13 H 0.072 0.928 14 C 0.087 3.913 15 N -0.888 5.888 16 Si 0.870 3.130 17 H -0.284 1.284 18 H -0.293 1.293 19 H -0.217 1.217 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.103 0.897 23 H 0.162 0.838 24 H 0.192 0.808 25 H 0.367 0.633 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 4.346 6.461 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.203 6.203 3 C -0.026 4.026 4 C -0.112 4.112 5 N -0.222 5.222 6 C -0.039 4.039 7 N -0.189 5.189 8 C 0.024 3.976 9 C 0.186 3.814 10 H 0.101 0.899 11 O -0.378 6.378 12 C -0.587 4.587 13 H 0.090 0.910 14 C -0.118 4.118 15 N -0.524 5.524 16 Si 0.696 3.304 17 H -0.211 1.211 18 H -0.219 1.219 19 H -0.139 1.139 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.121 0.879 23 H 0.179 0.821 24 H 0.209 0.791 25 H 0.215 0.785 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.471 4.397 6.624 12.365 hybrid contribution -0.336 -0.719 -0.010 0.794 sum -9.807 3.678 6.613 12.387 Atomic orbital electron populations 1.23110 0.78874 1.04314 1.00995 1.86223 1.20784 1.25047 1.88249 1.20743 0.94653 0.86508 1.00708 1.23174 1.00550 0.87356 1.00154 1.68146 1.11909 1.28384 1.13770 1.24725 0.86278 0.97516 0.95419 1.68231 1.40651 0.97945 1.12071 1.22779 0.89108 0.96052 0.89676 1.18846 0.84784 0.87243 0.90557 0.89937 1.86657 1.43026 1.53488 1.54650 1.21167 1.31246 1.12125 0.94177 0.90999 1.24922 0.94002 0.97127 0.95712 1.69933 1.31602 1.29587 1.21325 0.87040 0.77198 0.80294 0.85914 1.21079 1.21926 1.13924 0.92860 0.92633 0.87872 0.82074 0.79107 0.78501 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.84 101.05 0.99 1.25 15 2 O -0.29 -5.15 9.48 -19.51 -0.18 -5.34 15 3 C 0.02 0.46 6.70 -38.95 -0.26 0.20 15 4 C 0.05 0.86 10.31 -17.04 -0.18 0.68 15 5 N -0.51 -8.66 10.43 -14.47 -0.15 -8.81 15 6 C 0.25 4.33 12.28 -92.17 -1.13 3.19 15 7 N -0.47 -9.79 9.93 -10.70 -0.11 -9.89 15 8 C 0.17 3.80 5.74 -82.08 -0.47 3.33 15 9 C 0.24 5.98 2.58 -29.03 -0.07 5.90 15 10 H 0.08 2.04 6.68 -51.93 -0.35 1.69 15 11 O -0.57 -13.59 10.10 -35.23 -0.36 -13.94 15 12 C -0.55 -15.61 9.33 -34.44 -0.32 -15.93 15 13 H 0.07 2.26 7.98 -52.49 -0.42 1.84 15 14 C 0.09 2.53 5.47 -17.82 -0.10 2.43 15 15 N -0.89 -27.12 13.96 55.43 0.77 -26.34 15 16 Si 0.87 21.67 26.99 -169.99 -4.59 17.08 15 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 19 H -0.22 -5.29 5.30 56.52 0.30 -4.99 15 20 H 0.05 0.49 7.70 -51.93 -0.40 0.09 15 21 H 0.06 0.55 7.72 -51.93 -0.40 0.15 15 22 H 0.10 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.16 1.97 6.47 -52.49 -0.34 1.63 15 24 H 0.19 2.57 8.06 -52.49 -0.42 2.15 15 25 H 0.37 8.08 8.68 45.56 0.40 8.48 15 26 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 LS Contribution 232.39 15.07 3.50 3.50 Total: -1.00 -33.09 232.39 -4.24 -37.33 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -1.59 Total: 5.35 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.54 Total: 1.06 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.52 Total: -45.05 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.54 Total: -19.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.59 Total: 17.08 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.09 -4.24 -37.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275433.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.531 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds