Wall clock time and date at job start Mon Mar 30 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35928 * 116.99490 * 2 1 4 4 C 1.39113 * 120.85932 * 0.22514 * 3 2 1 5 5 N 1.32278 * 119.03021 * 180.27165 * 4 3 2 6 6 C 1.31798 * 120.87875 * 359.75271 * 5 4 3 7 7 N 1.31767 * 121.89004 * 359.97438 * 6 5 4 8 8 C 1.32309 * 120.87599 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.48070 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47210 * 164.99849 * 9 8 7 11 11 O 1.42903 * 109.47593 * 44.99547 * 9 8 7 12 12 C 1.50702 * 109.46869 * 284.99556 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 9 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 9 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 H 1.09004 * 109.47050 * 299.99514 * 1 2 3 21 21 H 1.09003 * 109.47446 * 59.99842 * 1 2 3 22 22 H 1.08994 * 109.47148 * 179.97438 * 1 2 3 23 23 H 1.07993 * 120.48279 * 359.97438 * 4 3 2 24 24 H 1.07997 * 119.05394 * 180.02562 * 6 5 4 25 25 H 0.96697 * 113.99557 * 300.00823 * 11 9 8 26 26 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.3058 2.3890 0.0047 5 7 1.9435 3.5479 -0.0010 6 6 3.2606 3.5952 -0.0060 7 7 3.9964 2.5021 -0.0052 8 6 3.4335 1.3047 0.0003 9 6 4.2837 0.0604 0.0007 10 1 3.6700 -0.7988 0.2714 11 8 5.3427 0.2071 0.9489 12 6 4.8654 -0.1508 -1.3734 13 1 4.6422 0.5465 -2.1674 14 6 5.6877 -1.2309 -1.6154 15 7 6.1997 -1.4122 -2.8131 16 14 6.0742 -2.4366 -0.2420 17 1 5.0624 -3.5236 -0.2383 18 1 7.4238 -3.0172 -0.4584 19 1 6.0438 -1.7275 1.0624 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2263 2.3577 0.0080 24 1 3.7509 4.5575 -0.0101 25 1 5.9301 0.9541 0.7699 26 1 6.7779 -2.1722 -2.9834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261275433.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:01 Heat of formation + Delta-G solvation = -58.392500 kcal Electronic energy + Delta-G solvation = -13817.162220 eV Core-core repulsion = 11281.962495 eV Total energy + Delta-G solvation = -2535.199725 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.25503 -39.43516 -38.04110 -34.53453 -34.46513 -32.31166 -29.61179 -28.50801 -25.99019 -24.58696 -22.95767 -19.68902 -19.04655 -18.93916 -18.12639 -17.01296 -16.78942 -16.20083 -15.31841 -15.23664 -15.19273 -14.85703 -14.53631 -13.85306 -13.14886 -13.03370 -12.79682 -12.45314 -12.38595 -12.08735 -11.72295 -11.23552 -10.89028 -10.62460 -9.98735 -9.57918 -8.37894 -6.54277 -0.01063 0.02370 1.41350 1.45519 1.75225 2.20252 2.42884 2.77315 2.97908 3.21248 3.26977 3.30953 3.80996 3.99975 4.34755 4.35191 4.40155 4.60866 4.74910 5.15331 5.30051 5.33943 5.85126 6.04313 6.23422 6.53197 7.01345 7.13415 7.23927 8.76398 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.011620 C = 0.010204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.859494 B = 2409.127493 C = 2743.313591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.320 6.320 3 C 0.021 3.979 4 C 0.071 3.929 5 N -0.503 5.503 6 C 0.243 3.757 7 N -0.498 5.498 8 C 0.129 3.871 9 C 0.253 3.747 10 H 0.080 0.920 11 O -0.572 6.572 12 C -0.550 4.550 13 H 0.026 0.974 14 C 0.033 3.967 15 N -0.935 5.935 16 Si 0.940 3.060 17 H -0.276 1.276 18 H -0.291 1.291 19 H -0.208 1.208 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.122 0.878 23 H 0.208 0.792 24 H 0.227 0.773 25 H 0.373 0.627 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.533 4.686 7.966 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.231 6.231 3 C -0.030 4.030 4 C -0.096 4.096 5 N -0.217 5.217 6 C -0.044 4.044 7 N -0.213 5.213 8 C -0.019 4.019 9 C 0.194 3.806 10 H 0.097 0.903 11 O -0.379 6.379 12 C -0.588 4.588 13 H 0.044 0.956 14 C -0.167 4.167 15 N -0.574 5.574 16 Si 0.763 3.237 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.130 1.130 20 H 0.097 0.903 21 H 0.088 0.912 22 H 0.141 0.859 23 H 0.224 0.776 24 H 0.243 0.757 25 H 0.222 0.778 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.200 4.744 8.132 14.631 hybrid contribution 0.060 -0.723 -0.526 0.896 sum -11.140 4.021 7.606 14.075 Atomic orbital electron populations 1.23551 0.75594 1.06421 1.02933 1.86184 1.24194 1.24703 1.88049 1.20726 0.93827 0.88042 1.00409 1.23850 1.02368 0.85929 0.97482 1.68276 1.11684 1.28597 1.13187 1.25400 0.86651 0.97841 0.94511 1.68131 1.41960 0.98380 1.12788 1.22353 0.90596 0.95588 0.93340 1.18473 0.84927 0.89117 0.88050 0.90255 1.86579 1.43258 1.53989 1.54093 1.21330 1.31296 1.10940 0.95256 0.95584 1.25827 0.93826 0.99049 0.98010 1.70058 1.32987 1.30760 1.23547 0.85962 0.76990 0.77874 0.82906 1.20242 1.21705 1.13006 0.90259 0.91153 0.85950 0.77584 0.75729 0.77820 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.29 15 2 O -0.32 -10.73 9.48 -92.73 -0.88 -11.61 15 3 C 0.02 0.75 6.70 22.68 0.15 0.90 15 4 C 0.07 2.07 10.31 84.84 0.87 2.94 15 5 N -0.50 -15.74 10.43 -199.70 -2.08 -17.83 15 6 C 0.24 8.04 12.28 180.89 2.22 10.26 15 7 N -0.50 -20.37 9.93 -187.75 -1.86 -22.23 15 8 C 0.13 5.66 5.74 42.69 0.24 5.90 15 9 C 0.25 12.48 2.58 29.10 0.08 12.56 15 10 H 0.08 3.92 6.68 -2.38 -0.02 3.91 15 11 O -0.57 -26.98 10.10 -148.98 -1.50 -28.48 15 12 C -0.55 -32.23 9.33 25.60 0.24 -32.00 15 13 H 0.03 1.71 7.98 -2.91 -0.02 1.69 15 14 C 0.03 1.95 5.47 84.66 0.46 2.42 15 15 N -0.93 -58.70 13.96 21.45 0.30 -58.40 15 16 Si 0.94 45.29 26.99 68.60 1.85 47.14 15 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 15 18 H -0.29 -13.79 7.11 99.48 0.71 -13.09 15 19 H -0.21 -9.64 5.30 99.48 0.53 -9.12 15 20 H 0.08 1.12 7.70 -2.38 -0.02 1.10 15 21 H 0.07 1.15 7.72 -2.39 -0.02 1.13 15 22 H 0.12 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.21 4.00 6.47 -2.91 -0.02 3.98 15 24 H 0.23 5.52 8.06 -2.91 -0.02 5.49 15 25 H 0.37 16.50 8.68 -74.06 -0.64 15.85 15 26 H 0.27 15.80 8.31 -92.71 -0.77 15.03 15 Total: -1.00 -73.10 232.39 1.60 -71.51 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.39 Total: 15.63 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.38 Total: 4.27 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -3.65 Total: -98.45 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.38 Total: -40.09 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.14 kcal Total: -73.10 1.60 -71.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275433.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.114 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds