Wall clock time and date at job start Mon Mar 30 2020 02:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 5 5 C 1.33385 * 125.20461 * 120.00316 * 4 2 1 6 6 C 1.38421 * 114.91874 * 179.97438 * 5 4 2 7 7 C 1.50703 * 122.53827 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47194 * 90.00010 * 7 6 5 9 9 H 1.07997 * 119.99946 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00147 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99955 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00091 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47570 * 59.99790 * 12 10 8 14 14 H 1.48501 * 109.47366 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46998 * 299.99655 * 12 10 8 16 16 C 1.33387 * 114.92513 * 359.97438 * 6 5 4 17 17 S 1.75888 * 125.19870 * 299.69431 * 4 2 1 18 18 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 19 19 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 20 20 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 24 24 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 25 25 H 1.07995 * 122.54102 * 359.97438 * 5 4 2 26 26 H 1.08997 * 109.47064 * 209.99797 * 7 6 5 27 27 H 1.09000 * 109.46984 * 330.00081 * 7 6 5 28 28 H 0.96999 * 119.99987 * 179.97438 * 11 10 8 29 29 H 1.07997 * 125.20745 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8025 -1.7995 1.2291 6 6 3.1404 -2.2765 2.4838 7 6 4.0026 -3.4966 2.6820 8 6 5.4503 -3.0834 2.7473 9 1 5.7193 -2.0416 2.6541 10 6 6.4317 -4.0354 2.9249 11 7 6.1042 -5.3041 3.0379 12 14 8.2263 -3.5233 3.0051 13 1 8.4240 -2.5881 4.1415 14 1 9.0760 -4.7256 3.1993 15 1 8.6057 -2.8492 1.7374 16 6 2.6451 -1.5746 3.5042 17 16 1.6990 -0.2259 2.8881 18 1 -0.3633 0.5137 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1370 -2.2732 0.3180 26 1 3.7237 -3.9913 3.6123 27 1 3.8579 -4.1831 1.8478 28 1 6.7946 -5.9740 3.1625 29 1 2.8041 -1.7978 4.5488 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281988.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:32 Heat of formation + Delta-G solvation = -12.289047 kcal Electronic energy + Delta-G solvation = -11410.185376 eV Core-core repulsion = 9423.278061 eV Total energy + Delta-G solvation = -1986.907315 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.38023 -36.49967 -34.84728 -31.12459 -28.83901 -27.98609 -25.72175 -23.84265 -21.30284 -19.70401 -18.51264 -17.61451 -16.67121 -16.20937 -15.04337 -14.76055 -14.54302 -14.24361 -13.92201 -13.52453 -13.21343 -13.13541 -12.81786 -12.60842 -12.55738 -12.21750 -12.04754 -12.03207 -11.60577 -11.49163 -11.25028 -10.61141 -9.40080 -9.03644 -8.20368 -6.34574 0.21380 0.87319 1.16145 1.38324 1.41556 1.49746 1.98348 2.41956 3.09423 3.73294 4.06560 4.28221 4.38712 4.51208 4.73524 4.80932 4.85030 4.95068 4.98216 5.13983 5.15765 5.27398 5.31673 5.39918 5.44014 5.66082 5.72466 5.97601 6.17146 6.77121 7.33765 8.88236 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.046334 B = 0.007510 C = 0.007248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.165734 B = 3727.589586 C = 3862.331820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C -0.143 4.143 4 C -0.162 4.162 5 C -0.152 4.152 6 C -0.081 4.081 7 C 0.076 3.924 8 C -0.529 4.529 9 H 0.052 0.948 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.267 1.267 16 C -0.246 4.246 17 S 0.103 5.897 18 H 0.056 0.944 19 H 0.083 0.917 20 H 0.051 0.949 21 H 0.090 0.910 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.129 0.871 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.266 0.734 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 12.218 -5.068 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.047 4.047 3 C -0.200 4.200 4 C -0.279 4.279 5 C -0.182 4.182 6 C -0.093 4.093 7 C 0.037 3.963 8 C -0.567 4.567 9 H 0.071 0.929 10 C -0.193 4.193 11 N -0.570 5.570 12 Si 0.790 3.210 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.192 1.192 16 C -0.381 4.381 17 S 0.366 5.634 18 H 0.075 0.925 19 H 0.102 0.898 20 H 0.071 0.929 21 H 0.108 0.892 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.075 0.925 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.256 13.229 -4.344 17.293 hybrid contribution 1.954 -1.668 -0.239 2.580 sum -8.302 11.561 -4.582 14.953 Atomic orbital electron populations 1.21870 0.92708 1.02230 1.03018 1.19857 0.96885 0.95975 0.92022 1.21885 1.00974 0.94105 1.03041 1.24831 1.04286 1.00198 0.98595 1.20057 1.01759 0.98429 0.97960 1.19401 0.97570 0.99263 0.93028 1.17805 0.92955 0.90097 0.95469 1.21331 0.91799 0.93522 1.50077 0.92930 1.25930 1.04066 0.94770 0.94558 1.70074 1.35134 1.01439 1.50389 0.85483 0.78534 0.77818 0.79131 1.19321 1.20409 1.19220 1.25372 1.08237 1.01784 1.02670 1.83299 1.52469 1.29325 0.98294 0.92477 0.89777 0.92944 0.89181 0.93356 0.89679 0.92479 0.85275 0.98020 0.97863 0.92509 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.12 71.98 0.66 -2.08 15 2 C -0.03 -0.64 3.30 -11.54 -0.04 -0.68 15 3 C -0.14 -2.92 9.11 71.98 0.66 -2.27 15 4 C -0.16 -5.25 5.10 24.59 0.13 -5.13 15 5 C -0.15 -6.10 9.81 21.21 0.21 -5.89 15 6 C -0.08 -3.75 4.99 -20.92 -0.10 -3.86 15 7 C 0.08 4.23 5.23 29.10 0.15 4.39 15 8 C -0.53 -31.08 9.09 25.60 0.23 -30.85 15 9 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15 10 C 0.00 0.29 5.46 84.65 0.46 0.75 15 11 N -0.93 -56.94 13.29 21.45 0.28 -56.66 15 12 Si 0.97 44.91 29.54 68.60 2.03 46.94 15 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 14 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 16 C -0.25 -10.06 10.98 66.72 0.73 -9.32 15 17 S 0.10 3.24 22.90 -56.49 -1.29 1.95 15 18 H 0.06 1.10 8.01 -2.39 -0.02 1.08 15 19 H 0.08 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.09 2.07 8.09 -2.39 -0.02 2.05 15 22 H 0.05 1.10 8.14 -2.38 -0.02 1.08 15 23 H 0.08 1.29 8.14 -2.39 -0.02 1.28 15 24 H 0.06 1.15 7.99 -2.39 -0.02 1.14 15 25 H 0.13 5.12 8.06 -2.91 -0.02 5.09 15 26 H 0.00 0.09 8.12 -2.39 -0.02 0.07 15 27 H 0.00 0.18 8.13 -2.39 -0.02 0.16 15 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 29 H 0.15 6.13 8.06 -2.91 -0.02 6.11 15 Total: -1.00 -64.50 264.30 5.21 -59.29 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.11 Total: 3.41 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 3.08 Total: -54.93 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.29 Total: 1.95 kcal Total: -64.50 5.21 -59.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281988.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.006 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds