Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46991 * 2 1 4 4 C 1.33383 * 122.54027 * 270.01766 * 3 2 1 5 5 S 1.75887 * 109.59638 * 179.97438 * 4 3 2 6 6 C 1.75891 * 90.96813 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.20452 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47344 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46775 * 299.97592 * 7 6 5 10 10 C 1.50699 * 109.47053 * 59.96865 * 7 6 5 11 11 H 1.07995 * 120.00269 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99688 * 180.02562 * 10 7 6 13 13 N 1.31512 * 119.99757 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00147 * 0.02562 * 12 10 7 15 15 H 1.48508 * 109.46873 * 90.00177 * 14 12 10 16 16 H 1.48504 * 109.47312 * 209.99753 * 14 12 10 17 17 H 1.48496 * 109.47387 * 330.00177 * 14 12 10 18 18 C 1.33390 * 109.59251 * 359.97438 * 6 5 4 19 19 H 1.09002 * 109.47173 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47315 * 300.00128 * 1 2 3 21 21 H 1.09003 * 109.46987 * 60.00472 * 1 2 3 22 22 H 1.09001 * 109.47753 * 239.99706 * 2 1 3 23 23 H 1.09003 * 109.46987 * 119.99528 * 2 1 3 24 24 H 1.08000 * 125.20529 * 0.02562 * 4 3 2 25 25 H 1.09002 * 109.47042 * 299.99790 * 9 7 6 26 26 H 1.08999 * 109.47383 * 59.99781 * 9 7 6 27 27 H 1.09007 * 109.47364 * 180.02562 * 9 7 6 28 28 H 0.97001 * 120.00470 * 180.02562 * 13 12 10 29 29 H 1.07997 * 122.53530 * 180.26541 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2711 2.0974 -1.1244 5 16 2.8419 3.7138 -0.7305 6 6 2.7212 3.3693 0.9902 7 6 3.0622 4.3352 2.0955 8 1 2.8936 3.8572 3.0605 9 6 4.5316 4.7452 1.9792 10 6 2.1889 5.5581 1.9812 11 1 1.4597 5.6286 1.1877 12 6 2.3210 6.5869 2.8896 13 7 1.5586 7.6538 2.7901 14 14 3.5828 6.4652 4.2616 15 1 4.8726 7.0388 3.8001 16 1 3.1008 7.2204 5.4459 17 1 3.7784 5.0398 4.6294 18 6 2.2807 2.1227 1.1670 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.1341 1.7120 -2.1240 25 1 5.1632 3.8608 2.0618 26 1 4.7001 5.2232 1.0142 27 1 4.7784 5.4436 2.7790 28 1 1.6517 8.3778 3.4289 29 1 2.1256 1.6949 2.1464 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = -2.023740 kcal Electronic energy + Delta-G solvation = -11624.770136 eV Core-core repulsion = 9638.307958 eV Total energy + Delta-G solvation = -1986.462178 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.40530 -36.60344 -34.01030 -32.64321 -29.23589 -27.14097 -25.48640 -23.87096 -21.37971 -19.80623 -18.58511 -17.82840 -16.74181 -16.04485 -15.10930 -14.92272 -14.65617 -14.31559 -14.13683 -13.60987 -13.37199 -13.19135 -12.96120 -12.51942 -12.28393 -12.25453 -11.92463 -11.73478 -11.47307 -11.30171 -11.13896 -10.76606 -9.33013 -9.08965 -8.31528 -6.37261 0.30624 0.93637 1.30531 1.34870 1.38242 1.46442 1.95008 2.30577 3.03568 3.95821 4.18495 4.31750 4.43796 4.53534 4.59832 4.67690 4.75644 4.85176 4.97048 5.07044 5.07858 5.11680 5.28519 5.43147 5.52680 5.61312 5.69852 5.82587 6.25741 6.67994 7.27207 8.84916 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044126 B = 0.009021 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.399950 B = 3103.252490 C = 3185.882236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.096 4.096 4 C -0.236 4.236 5 S 0.064 5.936 6 C -0.133 4.133 7 C 0.066 3.934 8 H 0.045 0.955 9 C -0.142 4.142 10 C -0.515 4.515 11 H 0.034 0.966 12 C 0.015 3.985 13 N -0.946 5.946 14 Si 0.950 3.050 15 H -0.265 1.265 16 H -0.297 1.297 17 H -0.244 1.244 18 C -0.170 4.170 19 H 0.078 0.922 20 H 0.041 0.959 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.183 0.817 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.267 0.733 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -14.562 -4.596 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.109 4.109 4 C -0.371 4.371 5 S 0.329 5.671 6 C -0.250 4.250 7 C 0.045 3.955 8 H 0.063 0.937 9 C -0.200 4.200 10 C -0.553 4.553 11 H 0.052 0.948 12 C -0.182 4.182 13 N -0.586 5.586 14 Si 0.776 3.224 15 H -0.191 1.191 16 H -0.225 1.225 17 H -0.168 1.168 18 C -0.200 4.200 19 H 0.096 0.904 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.105 0.895 23 H 0.097 0.903 24 H 0.200 0.800 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.708 -13.128 -5.409 14.675 hybrid contribution -0.277 -0.308 1.431 1.490 sum 3.430 -13.436 -3.978 14.426 Atomic orbital electron populations 1.21730 0.94643 1.02369 1.01443 1.20300 0.96021 0.89756 1.03688 1.19104 1.01654 0.98917 0.91209 1.25628 1.11705 0.96681 1.03084 1.84271 1.66636 1.14854 1.01386 1.24701 1.04885 0.98096 0.97332 1.17849 0.93491 0.92040 0.92101 0.93741 1.22118 0.96687 1.00325 1.00835 1.21175 1.19467 1.01286 1.13406 0.94813 1.25857 0.97880 0.94469 1.00038 1.70037 1.41605 1.08516 1.38481 0.85828 0.78903 0.79632 0.77987 1.19076 1.22499 1.16773 1.20196 1.05633 0.93930 1.00230 0.90354 0.94002 0.93144 0.89457 0.90300 0.79955 0.91710 0.93211 0.94241 0.92386 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.89 71.98 0.71 -2.31 15 2 C -0.06 -1.27 6.19 29.85 0.18 -1.08 15 3 C -0.10 -2.93 5.06 -20.92 -0.11 -3.04 15 4 C -0.24 -7.23 10.98 66.72 0.73 -6.50 15 5 S 0.06 2.44 23.02 -56.49 -1.30 1.14 15 6 C -0.13 -5.61 5.04 24.59 0.12 -5.49 15 7 C 0.07 3.10 2.27 -12.29 -0.03 3.07 15 8 H 0.04 2.09 7.15 -2.39 -0.02 2.07 15 9 C -0.14 -6.02 8.59 71.98 0.62 -5.40 15 10 C -0.52 -29.65 9.04 25.60 0.23 -29.42 15 11 H 0.03 2.18 7.98 -2.91 -0.02 2.16 15 12 C 0.01 0.87 5.45 84.66 0.46 1.33 15 13 N -0.95 -59.46 13.96 21.45 0.30 -59.16 15 14 Si 0.95 44.55 24.37 68.60 1.67 46.22 15 15 H -0.26 -11.80 6.87 99.48 0.68 -11.11 15 16 H -0.30 -13.89 7.11 99.48 0.71 -13.19 15 17 H -0.24 -10.49 6.53 99.48 0.65 -9.84 15 18 C -0.17 -6.21 9.81 21.22 0.21 -6.00 15 19 H 0.08 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.04 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 22 H 0.09 1.55 8.12 -2.39 -0.02 1.53 15 23 H 0.08 1.58 8.13 -2.39 -0.02 1.56 15 24 H 0.18 4.33 8.06 -2.91 -0.02 4.30 15 25 H 0.06 2.31 8.14 -2.39 -0.02 2.30 15 26 H 0.05 2.11 8.00 -2.39 -0.02 2.09 15 27 H 0.04 1.69 3.27 -2.38 -0.01 1.68 15 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 15 29 H 0.14 4.68 8.06 -2.91 -0.02 4.66 15 Total: -1.00 -65.11 253.82 4.85 -60.26 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.04 Total: 6.38 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 3.14 Total: -54.84 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.30 Total: -59.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.67 Total: 46.22 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.30 Total: 1.14 kcal Total: -65.11 4.85 -60.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.234 kcal (2) G-P(sol) polarization free energy of solvation -65.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds