Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 C 1.52998 * 109.47419 * 300.27906 * 9 7 2 12 12 F 1.39903 * 109.47186 * 179.97438 * 11 9 7 13 13 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 14 14 C 1.38290 * 119.97055 * 59.73176 * 13 9 7 15 15 C 1.38242 * 120.11157 * 179.72542 * 14 13 9 16 16 C 1.38167 * 120.05308 * 0.54736 * 15 14 13 17 17 C 1.38709 * 119.94615 * 359.72782 * 16 15 14 18 18 O 1.35899 * 120.05451 * 179.97438 * 17 16 15 19 19 C 1.38119 * 119.97337 * 240.00318 * 13 9 7 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47156 * 299.99789 * 11 9 7 22 22 H 1.09004 * 109.46783 * 60.00191 * 11 9 7 23 23 H 1.08005 * 119.94055 * 359.97438 * 14 13 9 24 24 H 1.08002 * 119.97509 * 180.25147 * 15 14 13 25 25 H 1.08003 * 120.02694 * 179.70643 * 16 15 14 26 26 H 0.96707 * 113.99875 * 270.01417 * 18 17 16 27 27 H 1.08003 * 120.02975 * 0.02756 * 19 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 6 0.3716 -2.5746 1.2550 12 9 -0.3282 -3.7860 1.2602 13 6 2.2305 -3.6445 0.0104 14 6 3.1385 -3.7725 1.0455 15 6 4.0344 -4.8253 1.0560 16 6 4.0321 -5.7461 0.0258 17 6 3.1262 -5.6167 -1.0165 18 8 3.1223 -6.5207 -2.0312 19 6 2.2242 -4.5623 -1.0217 20 1 -0.4850 0.8400 0.0004 21 1 0.9983 -2.5129 2.1447 22 1 -0.3368 -1.7462 1.2513 23 1 3.1450 -3.0510 1.8492 24 1 4.7399 -4.9254 1.8676 25 1 4.7354 -6.5657 0.0320 26 1 3.7028 -6.2869 -2.7685 27 1 1.5180 -4.4592 -1.8324 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292181.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = -103.025202 kcal Electronic energy + Delta-G solvation = -13523.752238 eV Core-core repulsion = 10966.697132 eV Total energy + Delta-G solvation = -2557.055106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.27585 -40.57353 -37.92928 -35.80358 -33.18138 -30.93458 -29.45299 -26.86539 -24.33903 -23.39110 -21.64681 -19.01251 -18.36350 -17.37831 -16.86369 -16.76277 -16.10352 -16.00044 -15.94930 -15.25308 -14.62948 -14.21097 -13.87663 -13.26941 -12.89894 -12.80112 -12.75023 -12.38976 -12.13511 -11.86974 -11.65062 -11.30791 -11.02642 -10.55381 -9.64825 -9.34647 -8.21457 -6.36690 0.44071 0.55385 1.45006 1.45271 1.53960 2.39042 2.85675 3.06811 3.38226 4.04377 4.11326 4.30613 4.34634 4.52553 4.59163 4.66849 4.77672 5.05222 5.13058 5.29499 5.45361 5.54642 5.62825 5.73002 5.93674 6.08840 6.20219 6.71545 6.91418 7.33052 8.84708 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.009882 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.875869 B = 2832.887206 C = 3123.258789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.053 3.947 10 H 0.009 0.991 11 C 0.066 3.934 12 F -0.250 7.250 13 C -0.046 4.046 14 C -0.136 4.136 15 C -0.098 4.098 16 C -0.162 4.162 17 C 0.100 3.900 18 O -0.508 6.508 19 C -0.171 4.171 20 H 0.268 0.732 21 H 0.063 0.937 22 H 0.085 0.915 23 H 0.122 0.878 24 H 0.156 0.844 25 H 0.152 0.848 26 H 0.407 0.593 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 -6.363 0.512 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.034 3.966 10 H 0.027 0.973 11 C 0.011 3.989 12 F -0.232 7.232 13 C -0.046 4.046 14 C -0.154 4.154 15 C -0.116 4.116 16 C -0.180 4.180 17 C 0.056 3.944 18 O -0.321 6.321 19 C -0.190 4.190 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.140 0.860 24 H 0.174 0.826 25 H 0.170 0.830 26 H 0.265 0.735 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.500 -6.567 0.855 10.005 hybrid contribution 0.106 1.224 -0.572 1.355 sum 7.606 -5.343 0.283 9.300 Atomic orbital electron populations 1.69945 1.07396 1.28166 1.50344 1.25834 0.95709 1.02797 0.93954 0.85488 0.78265 0.78138 0.79114 1.19786 1.20917 1.18930 1.21193 0.93288 0.89817 1.51880 0.91716 1.18272 0.92235 0.92279 0.93780 0.97299 1.22354 0.95564 0.81097 0.99895 1.92608 1.82099 1.50415 1.98038 1.20181 0.96118 0.94433 0.93870 1.21179 0.96245 0.99165 0.98795 1.21320 0.98319 0.93198 0.98777 1.21541 0.99985 1.01256 0.95239 1.18487 0.95845 0.89132 0.90984 1.84736 1.70300 1.46057 1.30993 1.21398 1.01680 0.95596 1.00319 0.92276 0.91913 0.89708 0.85990 0.82618 0.82990 0.73468 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.94 11.31 21.45 0.24 -50.70 15 2 C 0.02 0.87 5.30 84.65 0.45 1.32 15 3 Si 0.97 41.31 29.54 68.60 2.03 43.34 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 15 6 H -0.26 -10.83 7.11 99.48 0.71 -10.13 15 7 C -0.52 -27.57 8.24 25.60 0.21 -27.36 15 8 H 0.06 3.33 7.59 -2.91 -0.02 3.30 15 9 C 0.05 2.71 2.28 -12.29 -0.03 2.68 15 10 H 0.01 0.50 7.87 -2.38 -0.02 0.48 15 11 C 0.07 3.26 6.55 71.98 0.47 3.73 15 12 F -0.25 -12.36 17.07 44.97 0.77 -11.59 15 13 C -0.05 -2.02 4.47 -19.88 -0.09 -2.11 15 14 C -0.14 -5.19 8.70 22.28 0.19 -4.99 15 15 C -0.10 -2.98 10.04 22.25 0.22 -2.75 15 16 C -0.16 -4.76 9.99 22.37 0.22 -4.53 15 17 C 0.10 3.38 6.70 22.51 0.15 3.53 15 18 O -0.51 -14.50 13.50 -92.42 -1.25 -15.75 15 19 C -0.17 -7.00 9.61 22.37 0.21 -6.79 15 20 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 21 H 0.06 2.87 7.40 -2.39 -0.02 2.85 15 22 H 0.08 4.54 6.06 -2.38 -0.01 4.53 15 23 H 0.12 4.59 7.58 -2.91 -0.02 4.57 15 24 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 25 H 0.15 3.40 8.06 -2.91 -0.02 3.38 15 26 H 0.41 7.26 9.06 -74.05 -0.67 6.58 15 27 H 0.11 4.55 7.94 -2.91 -0.02 4.52 15 Total: -1.00 -61.49 242.56 4.32 -57.17 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.51 Total: 14.82 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 2.02 Total: -37.28 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.24 Total: -50.70 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.25 Total: -15.75 kcal Atomic # 9 Polarization: -12.36 SS G_CDS: 0.77 Total: -11.59 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -61.49 4.32 -57.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292181.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.854 kcal (2) G-P(sol) polarization free energy of solvation -61.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds