Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 O 1.42896 * 109.46977 * 299.99762 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 C 1.50694 * 109.47412 * 184.99886 * 12 9 7 14 14 C 1.38269 * 119.98628 * 89.99704 * 13 12 9 15 15 C 1.38222 * 120.05069 * 180.02562 * 14 13 12 16 16 C 1.38220 * 120.02381 * 359.95540 * 15 14 13 17 17 C 1.38432 * 119.97508 * 0.02562 * 16 15 14 18 18 F 1.35109 * 120.02329 * 179.97438 * 17 16 15 19 19 C 1.38175 * 119.98692 * 269.72742 * 13 12 9 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 0.96699 * 114.00348 * 300.00156 * 11 9 7 22 22 H 1.09004 * 109.46938 * 305.00367 * 12 9 7 23 23 H 1.09005 * 109.47154 * 64.99569 * 12 9 7 24 24 H 1.08001 * 119.97261 * 0.02562 * 14 13 12 25 25 H 1.07998 * 119.98684 * 179.97438 * 15 14 13 26 26 H 1.08007 * 120.00681 * 179.97438 * 16 15 14 27 27 H 1.07993 * 120.01450 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1670 12 6 2.2454 -3.6620 0.0018 13 6 1.4962 -4.9637 -0.1220 14 6 1.2328 -5.4933 -1.3718 15 6 0.5453 -6.6869 -1.4869 16 6 0.1211 -7.3528 -0.3524 17 6 0.3846 -6.8237 0.8994 18 9 -0.0301 -7.4736 2.0089 19 6 1.0776 -5.6303 1.0137 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9209 -2.5290 1.9984 22 1 2.9302 -3.5555 -0.8395 23 1 2.8109 -3.6555 0.9336 24 1 1.5646 -4.9739 -2.2587 25 1 0.3398 -7.0994 -2.4636 26 1 -0.4165 -8.2852 -0.4427 27 1 1.2876 -5.2189 1.9898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293580.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = -111.456422 kcal Electronic energy + Delta-G solvation = -13329.742887 eV Core-core repulsion = 10772.322176 eV Total energy + Delta-G solvation = -2557.420711 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.91240 -40.23995 -38.02170 -34.29563 -33.62781 -31.52158 -29.81680 -26.66096 -23.83926 -23.66142 -22.08076 -19.43531 -18.21291 -17.37619 -17.13583 -16.83534 -16.57997 -15.82095 -15.65875 -14.91805 -14.80469 -14.51767 -14.24389 -13.58360 -13.15071 -12.82451 -12.60790 -12.38912 -12.14597 -11.95889 -11.89933 -11.34743 -10.62849 -10.25870 -9.83533 -9.53063 -8.60342 -6.46408 0.19525 0.29349 1.54673 1.61933 1.81285 2.56297 2.65194 3.17498 3.25681 3.74534 3.84758 3.99603 4.18028 4.29668 4.37410 4.50629 4.58911 4.87957 5.07333 5.10146 5.17723 5.34015 5.39745 5.67344 5.85925 5.96883 6.14995 6.56104 7.16790 7.50743 8.76655 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.058202 B = 0.007343 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.965709 B = 3812.402691 C = 3992.718086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.116 2.884 4 H -0.288 1.288 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.659 4.659 8 H 0.055 0.945 9 C 0.219 3.781 10 H 0.019 0.981 11 O -0.590 6.590 12 C -0.091 4.091 13 C -0.050 4.050 14 C -0.143 4.143 15 C -0.084 4.084 16 C -0.164 4.164 17 C 0.078 3.922 18 F -0.149 7.149 19 C -0.156 4.156 20 H 0.267 0.733 21 H 0.362 0.638 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.136 0.864 25 H 0.167 0.833 26 H 0.159 0.841 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -12.128 -1.635 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.937 3.063 4 H -0.214 1.214 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.697 4.697 8 H 0.073 0.927 9 C 0.162 3.838 10 H 0.037 0.963 11 O -0.396 6.396 12 C -0.129 4.129 13 C -0.051 4.051 14 C -0.161 4.161 15 C -0.102 4.102 16 C -0.182 4.182 17 C 0.059 3.941 18 F -0.128 7.128 19 C -0.175 4.175 20 H 0.077 0.923 21 H 0.208 0.792 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.154 0.846 25 H 0.184 0.816 26 H 0.177 0.823 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.990 -10.598 -2.049 11.200 hybrid contribution 0.360 -1.586 0.750 1.791 sum 3.349 -12.184 -1.299 12.702 Atomic orbital electron populations 1.70787 1.08155 1.31190 1.45735 1.27310 0.96445 1.06557 0.91683 0.82972 0.74094 0.71218 0.78014 1.21383 1.19415 1.19366 1.22889 0.94863 0.93690 1.58248 0.92662 1.19378 0.88202 0.91796 0.84450 0.96268 1.86446 1.39926 1.96567 1.16640 1.21178 0.97694 0.91093 1.02887 1.19934 0.96823 0.95128 0.93169 1.21420 1.00481 0.97099 0.97096 1.21333 0.95531 0.93826 0.99473 1.21392 1.03679 1.02805 0.90348 1.17916 1.00018 0.92857 0.83318 1.91452 1.88592 1.80747 1.51988 1.21055 1.01483 0.94929 1.00067 0.92287 0.79178 0.90282 0.91071 0.84639 0.81590 0.82328 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.10 13.53 21.45 0.29 -56.81 15 2 C -0.02 -1.02 5.40 84.65 0.46 -0.57 15 3 Si 1.12 49.03 29.90 68.60 2.05 51.08 15 4 H -0.29 -12.88 7.11 99.48 0.71 -12.17 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 7 C -0.66 -35.94 8.76 25.60 0.22 -35.71 15 8 H 0.06 2.90 7.74 -2.91 -0.02 2.88 15 9 C 0.22 10.91 2.42 29.85 0.07 10.98 15 10 H 0.02 1.08 8.01 -2.39 -0.02 1.06 15 11 O -0.59 -29.82 11.52 -148.98 -1.72 -31.54 15 12 C -0.09 -3.57 4.97 29.85 0.15 -3.43 15 13 C -0.05 -1.77 4.96 -19.87 -0.10 -1.87 15 14 C -0.14 -4.32 9.70 22.27 0.22 -4.10 15 15 C -0.08 -2.06 10.04 22.26 0.22 -1.83 15 16 C -0.16 -4.19 10.03 22.31 0.22 -3.97 15 17 C 0.08 2.43 7.30 22.37 0.16 2.59 15 18 F -0.15 -4.66 17.27 44.97 0.78 -3.88 15 19 C -0.16 -5.36 9.39 22.31 0.21 -5.15 15 20 H 0.27 17.08 6.47 -92.70 -0.60 16.48 15 21 H 0.36 16.28 9.04 -74.06 -0.67 15.62 15 22 H 0.08 2.96 8.09 -2.38 -0.02 2.94 15 23 H 0.07 2.67 8.08 -2.38 -0.02 2.65 15 24 H 0.14 3.75 8.06 -2.91 -0.02 3.73 15 25 H 0.17 2.75 8.06 -2.91 -0.02 2.73 15 26 H 0.16 3.04 8.06 -2.91 -0.02 3.02 15 27 H 0.13 4.28 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -65.35 246.17 3.92 -61.43 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.68 Total: 22.77 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 1.84 Total: -43.05 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.29 Total: -56.81 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.72 Total: -31.54 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.78 Total: -3.88 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Total: -65.35 3.92 -61.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293580.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.027 kcal (2) G-P(sol) polarization free energy of solvation -65.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds