Wall clock time and date at job start Mon Mar 30 2020 02:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 11 11 F 1.39895 * 109.47042 * 299.99822 * 9 7 2 12 12 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 13 13 O 1.42899 * 109.47465 * 55.00206 * 12 9 7 14 14 C 1.35899 * 117.00595 * 179.97438 * 13 12 9 15 15 C 1.38730 * 120.05218 * 359.72608 * 14 13 12 16 16 C 1.38146 * 119.94425 * 179.74352 * 15 14 13 17 17 C 1.38264 * 120.05503 * 0.50706 * 16 15 14 18 18 C 1.38265 * 120.11010 * 359.77178 * 17 16 15 19 19 C 1.38148 * 120.05552 * 359.97224 * 18 17 16 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46669 * 175.00222 * 12 9 7 22 22 H 1.08997 * 109.47756 * 294.99680 * 12 9 7 23 23 H 1.08001 * 120.02950 * 359.97438 * 15 14 13 24 24 H 1.08005 * 119.97388 * 180.27560 * 16 15 14 25 25 H 1.07992 * 119.94479 * 179.74450 * 17 16 15 26 26 H 1.08004 * 119.97507 * 179.97438 * 18 17 16 27 27 H 1.08000 * 120.02412 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5562 -0.8920 11 9 0.4463 -2.5740 1.1402 12 6 2.2453 -3.6620 -0.0027 13 8 3.1422 -3.5229 1.1010 14 6 4.0951 -4.4810 1.2464 15 6 4.1618 -5.5364 0.3484 16 6 5.1346 -6.5061 0.4952 17 6 6.0348 -6.4312 1.5420 18 6 5.9667 -5.3834 2.4417 19 6 4.9990 -4.4083 2.2961 20 1 -0.4849 0.8400 0.0004 21 1 1.7032 -4.6036 0.0860 22 1 2.8115 -3.6552 -0.9341 23 1 3.4561 -5.5978 -0.4669 24 1 5.1898 -7.3256 -0.2062 25 1 6.7919 -7.1925 1.6575 26 1 6.6707 -5.3272 3.2588 27 1 4.9461 -3.5903 2.9994 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261302903.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:35 Heat of formation + Delta-G solvation = -71.645076 kcal Electronic energy + Delta-G solvation = -13302.297842 eV Core-core repulsion = 10746.603481 eV Total energy + Delta-G solvation = -2555.694361 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.60799 -39.57804 -36.91858 -32.91333 -30.91763 -30.24736 -28.79058 -25.32097 -22.60617 -21.97715 -20.45250 -17.95542 -16.81102 -15.79548 -15.44354 -15.02356 -14.66075 -14.28286 -13.73021 -13.42406 -13.21132 -13.11283 -12.21267 -12.10554 -11.49970 -11.37244 -10.96514 -10.71058 -10.56135 -10.48133 -10.28937 -9.36857 -8.82808 -8.78702 -8.60133 -7.80711 -6.14165 -4.28373 1.55935 1.73450 3.27364 3.33916 3.39535 3.84611 4.04689 4.35772 5.05153 5.11331 5.20166 5.31249 5.56168 5.66064 5.77277 5.84912 5.89200 5.99757 6.23920 6.57770 6.68217 6.71933 6.77091 7.05561 7.58167 7.81685 7.88283 8.06245 8.78069 9.45074 10.93746 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.045683 B = 0.007875 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.778975 B = 3554.923911 C = 3883.727599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.217 3.783 10 H 0.058 0.942 11 F -0.230 7.230 12 C 0.043 3.957 13 O -0.284 6.284 14 C 0.143 3.857 15 C -0.218 4.218 16 C -0.082 4.082 17 C -0.176 4.176 18 C -0.083 4.083 19 C -0.160 4.160 20 H 0.265 0.735 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 -9.853 0.613 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.132 4.132 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.182 3.818 10 H 0.075 0.925 11 F -0.211 7.211 12 C -0.032 4.032 13 O -0.196 6.196 14 C 0.096 3.904 15 C -0.237 4.237 16 C -0.100 4.100 17 C -0.195 4.195 18 C -0.101 4.101 19 C -0.179 4.179 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.144 0.856 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.477 -9.553 0.754 12.794 hybrid contribution 0.313 0.707 -0.177 0.794 sum 8.790 -8.845 0.578 12.484 Atomic orbital electron populations 1.69993 1.06170 1.27312 1.47852 1.25074 0.94868 0.99808 0.93462 0.86431 0.79981 0.82464 0.78191 1.20392 1.20980 1.19503 1.21367 0.93847 0.89844 1.54255 0.91206 1.19202 0.86122 0.92660 0.83858 0.92456 1.92729 1.76064 1.97261 1.55028 1.23755 0.91457 1.00229 0.87803 1.86361 1.40485 1.44165 1.48565 1.19345 0.89288 0.88137 0.93665 1.21328 1.03011 0.97141 1.02204 1.20884 0.94193 0.97642 0.97283 1.20921 1.01359 0.99983 0.97218 1.20900 0.97101 0.93590 0.98503 1.20500 0.96654 1.01621 0.99120 0.92491 0.93415 0.91681 0.85574 0.86346 0.86535 0.85897 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.08 12.95 55.43 0.72 -25.36 15 2 C 0.07 2.08 5.42 -17.82 -0.10 1.98 15 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.56 -15.69 8.46 -34.44 -0.29 -15.99 15 8 H 0.07 1.95 7.55 -52.49 -0.40 1.56 15 9 C 0.22 5.66 3.58 -27.88 -0.10 5.56 15 10 H 0.06 1.49 8.14 -51.93 -0.42 1.06 15 11 F -0.23 -6.60 16.62 2.25 0.04 -6.56 15 12 C 0.04 0.91 4.65 37.16 0.17 1.08 15 13 O -0.28 -6.33 9.47 -19.42 -0.18 -6.52 15 14 C 0.14 2.66 6.69 -39.22 -0.26 2.40 15 15 C -0.22 -3.48 9.04 -39.43 -0.36 -3.84 15 16 C -0.08 -1.10 10.04 -39.61 -0.40 -1.50 15 17 C -0.18 -2.25 10.04 -39.56 -0.40 -2.65 15 18 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 15 19 C -0.16 -2.65 9.99 -39.43 -0.39 -3.04 15 20 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 21 H 0.05 0.90 7.65 -51.93 -0.40 0.50 15 22 H 0.06 1.24 7.68 -51.93 -0.40 0.84 15 23 H 0.13 1.87 6.30 -52.49 -0.33 1.54 15 24 H 0.12 1.26 8.06 -52.48 -0.42 0.83 15 25 H 0.12 1.16 8.06 -52.49 -0.42 0.73 15 26 H 0.12 1.30 8.06 -52.48 -0.42 0.87 15 27 H 0.13 2.07 8.06 -52.49 -0.42 1.64 15 LS Contribution 245.70 15.07 3.70 3.70 Total: -1.00 -31.38 245.70 -6.04 -37.42 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -2.77 Total: -1.78 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.52 Total: -17.51 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.72 Total: -25.36 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.18 Total: -6.52 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.04 Total: -6.56 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.38 -6.04 -37.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302903.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.230 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds