Wall clock time and date at job start Mon Mar 30 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47050 * 2 1 4 4 F 1.39896 * 109.47019 * 120.00066 * 2 1 3 5 5 C 1.50696 * 109.47247 * 240.00103 * 2 1 3 6 6 C 1.38302 * 119.93469 * 114.99792 * 5 2 1 7 7 C 1.38094 * 120.07461 * 180.02562 * 6 5 2 8 8 C 1.38878 * 119.92859 * 0.27306 * 7 6 5 9 9 O 1.35748 * 120.07147 * 179.72501 * 8 7 6 10 10 C 1.34830 * 117.00101 * 354.46447 * 9 8 7 11 11 H 1.07999 * 119.99626 * 5.05831 * 10 9 8 12 12 C 1.38650 * 120.00326 * 185.05731 * 10 9 8 13 13 N 1.31558 * 120.00083 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47421 * 89.99979 * 14 12 10 16 16 H 1.48502 * 109.47010 * 209.99858 * 14 12 10 17 17 H 1.48498 * 109.47443 * 330.00127 * 14 12 10 18 18 C 1.38878 * 119.86109 * 359.47415 * 8 7 6 19 19 C 1.38104 * 119.93072 * 0.53047 * 18 8 7 20 20 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46949 * 299.99999 * 1 2 3 22 22 H 1.08996 * 109.46913 * 59.99951 * 1 2 3 23 23 H 1.08003 * 119.96310 * 359.97438 * 6 5 2 24 24 H 1.08000 * 120.04048 * 180.02562 * 7 6 5 25 25 H 0.97006 * 120.00005 * 180.02562 * 13 12 10 26 26 H 1.08003 * 120.03575 * 180.25499 * 18 8 7 27 27 H 1.07996 * 119.96455 * 179.74788 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0324 -0.7104 -1.2304 6 6 2.7399 -0.0105 -2.1908 7 6 3.2012 -0.6585 -3.3197 8 6 2.9489 -2.0132 -3.4928 9 8 3.3961 -2.6518 -4.6041 10 6 3.9778 -1.8923 -5.5542 11 1 4.1444 -0.8400 -5.3773 12 6 4.3620 -2.4621 -6.7584 13 7 4.1596 -3.7441 -6.9737 14 14 5.1685 -1.4099 -8.0744 15 1 6.6412 -1.4216 -7.8840 16 1 4.8385 -1.9556 -9.4155 17 1 4.6670 -0.0161 -7.9701 18 6 2.2427 -2.7143 -2.5242 19 6 1.7840 -2.0606 -1.3974 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 2.9313 1.0441 -2.0581 24 1 3.7540 -0.1116 -4.0691 25 1 4.4288 -4.1428 -7.8161 26 1 2.0485 -3.7688 -2.6540 27 1 1.2312 -2.6044 -0.6458 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261319578.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:18 Heat of formation + Delta-G solvation = -63.696669 kcal Electronic energy + Delta-G solvation = -13160.927680 eV Core-core repulsion = 10605.577988 eV Total energy + Delta-G solvation = -2555.349693 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.31585 -39.05649 -36.70679 -32.71128 -31.91385 -30.26774 -28.06421 -25.50141 -23.08148 -22.03124 -20.34348 -18.04001 -17.11010 -16.05903 -15.64613 -14.76070 -14.57587 -14.28874 -13.75520 -13.61668 -12.92642 -12.77987 -12.53311 -12.28962 -11.89585 -11.71316 -11.37397 -11.00855 -10.82837 -10.54626 -10.43300 -10.26283 -9.39926 -8.88913 -8.24953 -7.29517 -6.50277 -4.09397 2.16207 2.18778 3.09914 3.10738 3.15730 3.92446 4.45607 4.87524 4.93658 5.04095 5.13900 5.23245 5.37183 5.58716 5.74080 5.82213 6.05331 6.14081 6.17996 6.41093 6.61706 6.82369 6.99032 7.16935 7.27746 7.37467 7.74094 7.94438 8.95018 9.63810 10.67425 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.068507 B = 0.006772 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.616823 B = 4133.585265 C = 4361.113018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.146 3.854 3 H 0.078 0.922 4 F -0.219 7.219 5 C -0.228 4.228 6 C -0.055 4.055 7 C -0.236 4.236 8 C 0.159 3.841 9 O -0.174 6.174 10 C -0.394 4.394 11 H 0.093 0.907 12 C 0.040 3.960 13 N -0.860 5.860 14 Si 0.942 3.058 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.267 1.267 18 C -0.194 4.194 19 C -0.051 4.051 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.109 0.891 24 H 0.129 0.871 25 H 0.271 0.729 26 H 0.119 0.881 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 7.059 7.851 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.110 3.890 3 H 0.096 0.904 4 F -0.200 7.200 5 C -0.229 4.229 6 C -0.073 4.073 7 C -0.255 4.255 8 C 0.105 3.895 9 O -0.077 6.077 10 C -0.470 4.470 11 H 0.110 0.890 12 C -0.165 4.165 13 N -0.495 5.495 14 Si 0.767 3.233 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.191 1.191 18 C -0.213 4.213 19 C -0.070 4.070 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.127 0.873 24 H 0.147 0.853 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.190 6.625 7.600 10.919 hybrid contribution 0.469 0.515 -0.654 0.955 sum -3.722 7.140 6.947 10.634 Atomic orbital electron populations 1.22364 0.94578 1.03433 1.02606 1.20118 0.94024 0.94696 0.80123 0.90357 1.92795 1.90441 1.83704 1.53010 1.19547 1.09638 0.95324 0.98407 1.20563 0.95384 0.98231 0.93114 1.21130 1.08648 0.95239 1.00518 1.19432 0.90988 0.90873 0.88214 1.83979 1.65049 1.35368 1.23305 1.21354 1.38516 0.93508 0.93621 0.88957 1.25314 0.97292 0.96447 0.97421 1.70041 1.43702 1.10619 1.25119 0.85692 0.79231 0.79198 0.79196 1.19819 1.20196 1.19147 1.20203 1.05508 1.00174 0.95401 1.20411 0.97440 0.93341 0.95792 0.91506 0.92137 0.90766 0.87295 0.85311 0.91913 0.86289 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.51 37.16 0.35 -1.69 15 2 C 0.15 2.10 4.17 -27.88 -0.12 1.98 15 3 H 0.08 0.97 7.88 -51.92 -0.41 0.56 15 4 F -0.22 -3.53 16.93 2.25 0.04 -3.50 15 5 C -0.23 -4.00 5.05 -104.58 -0.53 -4.53 15 6 C -0.05 -1.00 9.66 -39.61 -0.38 -1.38 15 7 C -0.24 -5.10 9.17 -39.40 -0.36 -5.46 15 8 C 0.16 3.86 6.65 -39.11 -0.26 3.60 15 9 O -0.17 -4.96 9.76 0.05 0.00 -4.96 15 10 C -0.39 -10.92 9.49 30.88 0.29 -10.63 15 11 H 0.09 2.36 5.20 -52.49 -0.27 2.08 15 12 C 0.04 1.09 5.49 -17.52 -0.10 0.99 15 13 N -0.86 -25.04 13.67 55.48 0.76 -24.29 15 14 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 15 15 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 15 18 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 15 19 C -0.05 -0.95 9.14 -39.61 -0.36 -1.32 15 20 H 0.07 0.81 7.69 -51.93 -0.40 0.41 15 21 H 0.06 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.11 1.64 7.95 -52.48 -0.42 1.22 15 24 H 0.13 2.76 5.64 -52.49 -0.30 2.46 15 25 H 0.27 7.21 8.31 -40.82 -0.34 6.88 15 26 H 0.12 2.44 8.06 -52.48 -0.42 2.02 15 27 H 0.11 1.82 7.87 -52.49 -0.41 1.40 15 LS Contribution 244.44 15.07 3.68 3.68 Total: -1.00 -30.00 244.44 -5.01 -35.01 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -2.61 Total: 1.77 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -1.85 Total: -22.97 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.76 Total: -24.29 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.00 -5.01 -35.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319578.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.691 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds