Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47050 * 2 1 4 4 F 1.39896 * 109.47019 * 120.00066 * 2 1 3 5 5 C 1.50696 * 109.47247 * 240.00103 * 2 1 3 6 6 C 1.38302 * 119.93469 * 114.99792 * 5 2 1 7 7 C 1.38094 * 120.07461 * 180.02562 * 6 5 2 8 8 C 1.38878 * 119.92859 * 0.27306 * 7 6 5 9 9 O 1.35748 * 120.07147 * 179.72501 * 8 7 6 10 10 C 1.34830 * 117.00101 * 354.46447 * 9 8 7 11 11 H 1.07999 * 119.99626 * 5.05831 * 10 9 8 12 12 C 1.38650 * 120.00326 * 185.05731 * 10 9 8 13 13 N 1.31558 * 120.00083 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47421 * 89.99979 * 14 12 10 16 16 H 1.48502 * 109.47010 * 209.99858 * 14 12 10 17 17 H 1.48498 * 109.47443 * 330.00127 * 14 12 10 18 18 C 1.38878 * 119.86109 * 359.47415 * 8 7 6 19 19 C 1.38104 * 119.93072 * 0.53047 * 18 8 7 20 20 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46949 * 299.99999 * 1 2 3 22 22 H 1.08996 * 109.46913 * 59.99951 * 1 2 3 23 23 H 1.08003 * 119.96310 * 359.97438 * 6 5 2 24 24 H 1.08000 * 120.04048 * 180.02562 * 7 6 5 25 25 H 0.97006 * 120.00005 * 180.02562 * 13 12 10 26 26 H 1.08003 * 120.03575 * 180.25499 * 18 8 7 27 27 H 1.07996 * 119.96455 * 179.74788 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0324 -0.7104 -1.2304 6 6 2.7399 -0.0105 -2.1908 7 6 3.2012 -0.6585 -3.3197 8 6 2.9489 -2.0132 -3.4928 9 8 3.3961 -2.6518 -4.6041 10 6 3.9778 -1.8923 -5.5542 11 1 4.1444 -0.8400 -5.3773 12 6 4.3620 -2.4621 -6.7584 13 7 4.1596 -3.7441 -6.9737 14 14 5.1685 -1.4099 -8.0744 15 1 6.6412 -1.4216 -7.8840 16 1 4.8385 -1.9556 -9.4155 17 1 4.6670 -0.0161 -7.9701 18 6 2.2427 -2.7143 -2.5242 19 6 1.7840 -2.0606 -1.3974 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 2.9313 1.0441 -2.0581 24 1 3.7540 -0.1116 -4.0691 25 1 4.4288 -4.1428 -7.8161 26 1 2.0485 -3.7688 -2.6540 27 1 1.2312 -2.6044 -0.6458 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319578.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = -81.698407 kcal Electronic energy + Delta-G solvation = -13161.708294 eV Core-core repulsion = 10605.577988 eV Total energy + Delta-G solvation = -2556.130307 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.52882 -40.79898 -38.42857 -34.48161 -33.41691 -31.88391 -29.51047 -27.42979 -24.46081 -23.64685 -21.85489 -19.87001 -18.91532 -17.38603 -17.06198 -16.30257 -15.99569 -15.89749 -15.52259 -15.33804 -14.57883 -14.28930 -13.79505 -13.64174 -13.48989 -12.99390 -12.97169 -12.54791 -12.47335 -12.13052 -11.78374 -11.57912 -11.21852 -10.81913 -9.84996 -9.03992 -8.49304 -6.18242 0.53614 0.56855 1.35464 1.44526 1.53231 2.16750 2.75931 3.11096 3.43736 3.67643 3.83314 3.96925 4.15100 4.25063 4.35279 4.52000 4.66954 4.86212 4.98394 5.03294 5.18113 5.24323 5.26571 5.49087 5.65283 5.70589 5.99645 6.12380 6.95021 7.73855 8.73723 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.068507 B = 0.006772 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.616823 B = 4133.585265 C = 4361.113018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.110 0.890 4 F -0.227 7.227 5 C -0.208 4.208 6 C -0.050 4.050 7 C -0.244 4.244 8 C 0.119 3.881 9 O -0.229 6.229 10 C -0.417 4.417 11 H 0.105 0.895 12 C -0.022 4.022 13 N -0.920 5.920 14 Si 1.021 2.979 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.251 1.251 18 C -0.207 4.207 19 C -0.050 4.050 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.152 0.848 24 H 0.125 0.875 25 H 0.273 0.727 26 H 0.115 0.885 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 9.769 9.471 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.108 3.892 3 H 0.127 0.873 4 F -0.208 7.208 5 C -0.209 4.209 6 C -0.068 4.068 7 C -0.263 4.263 8 C 0.068 3.932 9 O -0.136 6.136 10 C -0.493 4.493 11 H 0.122 0.878 12 C -0.220 4.220 13 N -0.558 5.558 14 Si 0.840 3.160 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.174 1.174 18 C -0.226 4.226 19 C -0.068 4.068 20 H 0.080 0.920 21 H 0.103 0.897 22 H 0.100 0.900 23 H 0.170 0.830 24 H 0.143 0.857 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.807 9.362 9.282 14.032 hybrid contribution 0.505 -0.246 -0.813 0.988 sum -4.302 9.115 8.469 13.166 Atomic orbital electron populations 1.22361 0.92407 1.03727 1.04281 1.20378 0.95697 0.95348 0.77806 0.87255 1.92788 1.90718 1.84068 1.53266 1.20130 1.06701 0.94928 0.99162 1.20994 0.93976 1.00243 0.91558 1.21283 1.08874 0.94307 1.01853 1.19986 0.92567 0.92558 0.88065 1.83948 1.67683 1.36917 1.25020 1.21874 1.38902 0.94250 0.94229 0.87798 1.26634 0.97778 0.97878 0.99707 1.70189 1.46472 1.12944 1.26164 0.84559 0.78230 0.77721 0.75527 1.18833 1.19624 1.17424 1.20429 1.05718 1.00366 0.96065 1.20763 0.96722 0.94225 0.95047 0.91992 0.89721 0.89953 0.83038 0.85708 0.91754 0.86728 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.51 71.98 0.68 -2.55 15 2 C 0.14 3.41 4.17 29.85 0.12 3.53 15 3 H 0.11 2.02 7.88 -2.38 -0.02 2.01 15 4 F -0.23 -6.39 16.93 44.97 0.76 -5.63 15 5 C -0.21 -6.56 5.05 -19.84 -0.10 -6.66 15 6 C -0.05 -1.66 9.66 22.25 0.21 -1.44 15 7 C -0.24 -10.45 9.17 22.39 0.21 -10.24 15 8 C 0.12 5.95 6.65 22.58 0.15 6.10 15 9 O -0.23 -13.84 9.76 -22.72 -0.22 -14.06 15 10 C -0.42 -24.12 9.49 67.92 0.64 -23.47 15 11 H 0.10 5.46 5.20 -2.91 -0.02 5.45 15 12 C -0.02 -1.26 5.49 84.83 0.47 -0.79 15 13 N -0.92 -56.33 13.67 21.61 0.30 -56.03 15 14 Si 1.02 42.31 29.55 68.60 2.03 44.33 15 15 H -0.26 -10.39 7.11 99.48 0.71 -9.69 15 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 17 H -0.25 -9.56 7.11 99.48 0.71 -8.86 15 18 C -0.21 -8.97 9.99 22.39 0.22 -8.75 15 19 C -0.05 -1.74 9.14 22.25 0.20 -1.53 15 20 H 0.06 1.25 7.69 -2.39 -0.02 1.23 15 21 H 0.08 1.25 8.14 -2.39 -0.02 1.24 15 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.15 3.77 7.95 -2.91 -0.02 3.74 15 24 H 0.13 5.35 5.64 -2.91 -0.02 5.34 15 25 H 0.27 15.30 8.31 -92.70 -0.77 14.53 15 26 H 0.11 4.93 8.06 -2.91 -0.02 4.91 15 27 H 0.14 4.12 7.87 -2.91 -0.02 4.09 15 Total: -1.00 -68.77 244.44 6.85 -61.92 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.17 Total: 15.27 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 2.82 Total: -45.81 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.30 Total: -56.03 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.22 Total: -14.06 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.76 Total: -5.63 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -68.77 6.85 -61.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319578.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.778 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds