Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 12 12 F 1.39897 * 109.47422 * 300.00142 * 11 9 7 13 13 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 14 14 C 1.38166 * 120.02439 * 300.00141 * 13 9 7 15 15 C 1.38245 * 120.05350 * 179.97438 * 14 13 9 16 16 C 1.38285 * 120.11243 * 359.97438 * 15 14 13 17 17 C 1.38128 * 120.05610 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.03046 * 119.72123 * 13 9 7 19 19 O 1.35899 * 120.05300 * 0.02562 * 18 13 9 20 20 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 60.00207 * 11 9 7 22 22 H 1.08998 * 109.47533 * 179.97438 * 11 9 7 23 23 H 1.07997 * 119.97595 * 359.97341 * 14 13 9 24 24 H 1.08005 * 119.94515 * 179.97438 * 15 14 13 25 25 H 1.08006 * 119.97681 * 179.97438 * 16 15 14 26 26 H 1.07999 * 120.02895 * 179.97438 * 17 16 15 27 27 H 0.96694 * 114.00525 * 89.99686 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2489 12 9 -0.5372 -1.5171 -1.2495 13 6 2.2304 -3.6446 0.0005 14 6 3.1343 -3.7814 -1.0354 15 6 4.0332 -4.8317 -1.0358 16 6 4.0306 -5.7474 0.0004 17 6 3.1290 -5.6150 1.0384 18 6 2.2289 -4.5591 1.0434 19 8 1.3442 -4.4237 2.0661 20 1 -0.4850 0.8400 -0.0004 21 1 0.9988 -2.5228 -2.1388 22 1 -0.1728 -3.5245 -1.2492 23 1 3.1385 -3.0673 -1.8456 24 1 4.7387 -4.9371 -1.8467 25 1 4.7336 -6.5673 -0.0023 26 1 3.1271 -6.3307 1.8472 27 1 0.5054 -4.8832 1.9240 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261320959.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = -74.472609 kcal Electronic energy + Delta-G solvation = -13810.092722 eV Core-core repulsion = 11254.275750 eV Total energy + Delta-G solvation = -2555.816972 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.56613 -40.65729 -37.44169 -35.79943 -33.36896 -30.72723 -29.36496 -26.77216 -24.32405 -23.17646 -21.54845 -19.17285 -18.31038 -17.29765 -16.71399 -16.42849 -15.94488 -15.81527 -15.59820 -14.95779 -14.63757 -14.10089 -13.65941 -13.14116 -12.93665 -12.73386 -12.61463 -12.38696 -12.06895 -11.83387 -11.34471 -10.93183 -10.89390 -10.36767 -9.59889 -9.26703 -7.92252 -6.13838 0.47723 0.58716 1.40457 1.42154 1.49808 2.43975 2.90201 3.21678 3.49770 4.11318 4.16762 4.31422 4.34725 4.52011 4.59742 4.76755 4.90990 5.07831 5.15091 5.40396 5.49989 5.64380 5.74540 5.78614 6.01201 6.10945 6.29259 6.84533 6.97788 7.47090 8.96603 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.010969 C = 0.010201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.593299 B = 2552.124568 C = 2744.230843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.048 0.952 9 C 0.051 3.949 10 H 0.016 0.984 11 C 0.081 3.919 12 F -0.194 7.194 13 C -0.094 4.094 14 C -0.114 4.114 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.148 4.148 18 C 0.076 3.924 19 O -0.511 6.511 20 H 0.252 0.748 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.116 0.884 24 H 0.149 0.851 25 H 0.159 0.841 26 H 0.145 0.855 27 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -10.895 -1.862 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.067 0.933 9 C 0.032 3.968 10 H 0.034 0.966 11 C 0.025 3.975 12 F -0.175 7.175 13 C -0.095 4.095 14 C -0.132 4.132 15 C -0.146 4.146 16 C -0.134 4.134 17 C -0.167 4.167 18 C 0.032 3.968 19 O -0.322 6.322 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.134 0.866 24 H 0.167 0.833 25 H 0.176 0.824 26 H 0.162 0.838 27 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.373 -10.406 -1.607 11.821 hybrid contribution -0.392 0.989 -0.038 1.065 sum 4.981 -9.417 -1.645 10.779 Atomic orbital electron populations 1.70733 1.06664 1.25967 1.47195 1.25803 0.95790 1.02328 0.95067 0.85716 0.78408 0.79394 0.78700 1.19404 1.20876 1.20149 1.21083 0.92473 0.90776 1.54012 0.93341 1.18184 0.92675 0.91638 0.94281 0.96571 1.22163 0.89710 0.85986 0.99616 1.92926 1.68878 1.58236 1.97463 1.20586 0.98600 0.95958 0.94350 1.21066 0.95406 0.98456 0.98268 1.21456 0.98790 0.94369 0.99968 1.21308 0.98831 1.00040 0.93229 1.21581 0.97264 0.97438 1.00392 1.18662 0.94589 0.95404 0.88173 1.84789 1.29448 1.77322 1.40643 0.93793 0.93312 0.93750 0.86595 0.83288 0.82379 0.83756 0.74529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.41 9.50 21.45 0.20 -52.20 15 2 C 0.01 0.74 5.20 84.65 0.44 1.18 15 3 Si 0.95 45.43 29.54 68.60 2.03 47.45 15 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.28 -13.21 7.11 99.48 0.71 -12.51 15 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 7 C -0.55 -31.16 8.24 25.60 0.21 -30.95 15 8 H 0.05 2.77 7.60 -2.91 -0.02 2.74 15 9 C 0.05 2.63 2.40 -12.29 -0.03 2.60 15 10 H 0.02 0.93 6.99 -2.39 -0.02 0.91 15 11 C 0.08 3.92 6.75 71.98 0.49 4.41 15 12 F -0.19 -10.97 12.95 44.97 0.58 -10.39 15 13 C -0.09 -4.04 4.75 -19.77 -0.09 -4.14 15 14 C -0.11 -4.25 8.71 22.25 0.19 -4.06 15 15 C -0.13 -3.66 10.04 22.28 0.22 -3.44 15 16 C -0.12 -2.99 10.04 22.25 0.22 -2.77 15 17 C -0.15 -4.41 9.99 22.37 0.22 -4.19 15 18 C 0.08 2.89 6.68 22.50 0.15 3.04 15 19 O -0.51 -19.31 12.27 -92.42 -1.13 -20.44 15 20 H 0.25 14.61 8.31 -92.71 -0.77 13.84 15 21 H 0.05 2.23 7.39 -2.39 -0.02 2.22 15 22 H 0.04 1.87 8.14 -2.39 -0.02 1.86 15 23 H 0.12 4.43 7.57 -2.91 -0.02 4.41 15 24 H 0.15 3.21 8.06 -2.91 -0.02 3.18 15 25 H 0.16 2.75 8.06 -2.91 -0.02 2.73 15 26 H 0.14 3.47 8.06 -2.91 -0.02 3.44 15 27 H 0.40 11.09 9.06 -74.06 -0.67 10.42 15 Total: -1.00 -68.75 237.63 4.22 -64.54 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.51 Total: 9.36 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 2.03 Total: -38.31 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.20 Total: -52.20 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.13 Total: -20.44 kcal Atomic # 9 Polarization: -10.97 SS G_CDS: 0.58 Total: -10.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -68.75 4.22 -64.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320959.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.935 kcal (2) G-P(sol) polarization free energy of solvation -68.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds