Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47594 * 2 1 4 4 F 1.39904 * 109.46753 * 119.99701 * 2 1 3 5 5 C 1.50698 * 109.47468 * 239.99523 * 2 1 3 6 6 C 1.38131 * 120.03153 * 94.99784 * 5 2 1 7 7 C 1.38280 * 120.06347 * 180.02562 * 6 5 2 8 8 C 1.38317 * 120.14091 * 359.97438 * 7 6 5 9 9 C 1.38072 * 120.07130 * 359.97438 * 8 7 6 10 10 C 1.38853 * 120.03777 * 274.98454 * 5 2 1 11 11 O 1.35756 * 120.06723 * 0.02562 * 10 5 2 12 12 C 1.34831 * 117.00019 * 174.40576 * 11 10 5 13 13 H 1.07994 * 119.99583 * 5.06418 * 12 11 10 14 14 C 1.38651 * 119.99899 * 185.06419 * 12 11 10 15 15 N 1.31556 * 119.99855 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47090 * 59.99856 * 16 14 12 18 18 H 1.48496 * 109.47310 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46789 * 300.00021 * 16 14 12 20 20 H 1.08994 * 109.47139 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46939 * 300.00243 * 1 2 3 22 22 H 1.09004 * 109.46635 * 60.00159 * 1 2 3 23 23 H 1.07997 * 119.96548 * 359.97438 * 6 5 2 24 24 H 1.08005 * 119.92352 * 179.97438 * 7 6 5 25 25 H 1.08002 * 119.96743 * 179.71957 * 8 7 6 26 26 H 1.08003 * 120.03924 * 180.02562 * 9 8 7 27 27 H 0.97002 * 119.99818 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1424 5 6 2.0324 -0.7105 -1.2304 6 6 2.3611 0.0126 -2.3604 7 6 2.8217 -0.6387 -3.4900 8 6 2.9553 -2.0154 -3.4919 9 6 2.6293 -2.7437 -2.3651 10 6 2.1657 -2.0926 -1.2292 11 8 1.8432 -2.8060 -0.1201 12 6 1.8848 -4.1498 -0.2231 13 1 2.2437 -4.6108 -1.1314 14 6 1.4669 -4.9396 0.8370 15 7 1.0302 -4.3779 1.9436 16 14 1.5252 -6.8012 0.6946 17 1 2.9247 -7.2356 0.4534 18 1 1.0288 -7.4099 1.9548 19 1 0.6693 -7.2380 -0.4375 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 2.2575 1.0876 -2.3621 24 1 3.0777 -0.0711 -4.3725 25 1 3.3109 -2.5216 -4.3772 26 1 2.7342 -3.8186 -2.3671 27 1 0.7375 -4.9304 2.6852 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261322298.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -58.300878 kcal Electronic energy + Delta-G solvation = -13796.277356 eV Core-core repulsion = 11241.161642 eV Total energy + Delta-G solvation = -2555.115714 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.57844 -39.00335 -36.38797 -32.65910 -32.19001 -29.18866 -28.35704 -25.34393 -23.14281 -21.61289 -20.22859 -17.93353 -16.91134 -15.72327 -15.18194 -14.56030 -14.28893 -14.00224 -13.71111 -13.42795 -13.24833 -12.51695 -11.93031 -11.73901 -11.62163 -11.32553 -11.27494 -10.87247 -10.74693 -10.46026 -10.24244 -10.11010 -9.23229 -8.81658 -8.12410 -7.21748 -6.40479 -3.99782 2.09301 2.37493 3.14715 3.15813 3.18396 3.98425 4.51736 5.10123 5.16073 5.34323 5.46219 5.49536 5.68097 5.77776 5.84703 6.05140 6.20937 6.28128 6.62054 6.67233 6.76419 6.83292 7.12347 7.20075 7.35941 7.41619 7.80956 8.01416 9.03033 9.73288 10.75748 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.012021 C = 0.009256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.986519 B = 2328.704513 C = 3024.492044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.152 3.848 3 H 0.070 0.930 4 F -0.194 7.194 5 C -0.206 4.206 6 C -0.062 4.062 7 C -0.220 4.220 8 C -0.069 4.069 9 C -0.237 4.237 10 C 0.167 3.833 11 O -0.154 6.154 12 C -0.398 4.398 13 H 0.090 0.910 14 C 0.042 3.958 15 N -0.852 5.852 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 H 0.074 0.926 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 5.178 -6.016 7.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.116 3.884 3 H 0.088 0.912 4 F -0.175 7.175 5 C -0.208 4.208 6 C -0.081 4.081 7 C -0.239 4.239 8 C -0.087 4.087 9 C -0.256 4.256 10 C 0.112 3.888 11 O -0.056 6.056 12 C -0.474 4.474 13 H 0.107 0.893 14 C -0.163 4.163 15 N -0.485 5.485 16 Si 0.763 3.237 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.196 1.196 20 H 0.093 0.907 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.130 0.870 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.146 0.854 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.264 5.136 -5.485 7.519 hybrid contribution 0.122 -1.044 -0.191 1.069 sum 0.386 4.091 -5.677 7.008 Atomic orbital electron populations 1.22304 0.94752 1.04116 1.01561 1.19913 0.94187 0.93588 0.80697 0.91172 1.92924 1.89960 1.83206 1.51415 1.19394 1.12420 0.91729 0.97258 1.20431 0.97250 0.98167 0.92228 1.20520 1.10410 0.94469 0.98535 1.20781 0.97163 0.93943 0.96823 1.21166 1.09452 1.00750 0.94278 1.19116 0.91921 0.90732 0.87076 1.84103 1.73762 1.19379 1.28308 1.21309 1.45063 0.78278 1.02727 0.89251 1.25274 0.96097 1.00292 0.94631 1.70068 1.38598 1.36091 1.03770 0.85821 0.78994 0.80777 0.78060 1.19532 1.20267 1.19552 0.90674 0.92263 0.91774 0.86981 0.87553 0.87483 0.85442 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.63 37.16 0.36 -2.72 15 2 C 0.15 3.06 4.06 -27.88 -0.11 2.95 15 3 H 0.07 1.15 8.05 -51.93 -0.42 0.74 15 4 F -0.19 -4.83 15.33 2.25 0.03 -4.80 15 5 C -0.21 -4.41 5.05 -104.43 -0.53 -4.94 15 6 C -0.06 -1.13 9.68 -39.60 -0.38 -1.51 15 7 C -0.22 -3.85 10.04 -39.54 -0.40 -4.25 15 8 C -0.07 -1.29 10.04 -39.61 -0.40 -1.68 15 9 C -0.24 -5.27 9.17 -39.40 -0.36 -5.63 15 10 C 0.17 4.12 6.53 -39.11 -0.26 3.87 15 11 O -0.15 -4.41 7.89 0.03 0.00 -4.41 15 12 C -0.40 -11.22 9.49 30.88 0.29 -10.93 15 13 H 0.09 2.33 5.20 -52.49 -0.27 2.06 15 14 C 0.04 1.18 5.49 -17.52 -0.10 1.08 15 15 N -0.85 -25.18 13.67 55.48 0.76 -24.42 15 16 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 15 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 19 H -0.27 -5.76 7.11 56.52 0.40 -5.35 15 20 H 0.07 1.60 8.14 -51.93 -0.42 1.18 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.11 1.63 8.06 -52.49 -0.42 1.21 15 24 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 25 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.13 2.82 5.64 -52.48 -0.30 2.52 15 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 242.74 15.07 3.66 3.66 Total: -1.00 -31.14 242.74 -5.11 -36.25 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.66 Total: 1.85 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -1.88 Total: -23.77 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.76 Total: -24.42 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.41 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.03 Total: -4.80 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.14 -5.11 -36.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322298.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.052 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds