Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47594 * 2 1 4 4 F 1.39904 * 109.46753 * 119.99701 * 2 1 3 5 5 C 1.50698 * 109.47468 * 239.99523 * 2 1 3 6 6 C 1.38131 * 120.03153 * 94.99784 * 5 2 1 7 7 C 1.38280 * 120.06347 * 180.02562 * 6 5 2 8 8 C 1.38317 * 120.14091 * 359.97438 * 7 6 5 9 9 C 1.38072 * 120.07130 * 359.97438 * 8 7 6 10 10 C 1.38853 * 120.03777 * 274.98454 * 5 2 1 11 11 O 1.35756 * 120.06723 * 0.02562 * 10 5 2 12 12 C 1.34831 * 117.00019 * 174.40576 * 11 10 5 13 13 H 1.07994 * 119.99583 * 5.06418 * 12 11 10 14 14 C 1.38651 * 119.99899 * 185.06419 * 12 11 10 15 15 N 1.31556 * 119.99855 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47090 * 59.99856 * 16 14 12 18 18 H 1.48496 * 109.47310 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46789 * 300.00021 * 16 14 12 20 20 H 1.08994 * 109.47139 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46939 * 300.00243 * 1 2 3 22 22 H 1.09004 * 109.46635 * 60.00159 * 1 2 3 23 23 H 1.07997 * 119.96548 * 359.97438 * 6 5 2 24 24 H 1.08005 * 119.92352 * 179.97438 * 7 6 5 25 25 H 1.08002 * 119.96743 * 179.71957 * 8 7 6 26 26 H 1.08003 * 120.03924 * 180.02562 * 9 8 7 27 27 H 0.97002 * 119.99818 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1424 5 6 2.0324 -0.7105 -1.2304 6 6 2.3611 0.0126 -2.3604 7 6 2.8217 -0.6387 -3.4900 8 6 2.9553 -2.0154 -3.4919 9 6 2.6293 -2.7437 -2.3651 10 6 2.1657 -2.0926 -1.2292 11 8 1.8432 -2.8060 -0.1201 12 6 1.8848 -4.1498 -0.2231 13 1 2.2437 -4.6108 -1.1314 14 6 1.4669 -4.9396 0.8370 15 7 1.0302 -4.3779 1.9436 16 14 1.5252 -6.8012 0.6946 17 1 2.9247 -7.2356 0.4534 18 1 1.0288 -7.4099 1.9548 19 1 0.6693 -7.2380 -0.4375 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 2.2575 1.0876 -2.3621 24 1 3.0777 -0.0711 -4.3725 25 1 3.3109 -2.5216 -4.3772 26 1 2.7342 -3.8186 -2.3671 27 1 0.7375 -4.9304 2.6852 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322298.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -77.884002 kcal Electronic energy + Delta-G solvation = -13797.126544 eV Core-core repulsion = 11241.161642 eV Total energy + Delta-G solvation = -2555.964902 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.34237 -40.71900 -38.12423 -34.35609 -34.05218 -30.76667 -29.96915 -27.33534 -24.68783 -23.30787 -21.82066 -19.78090 -18.73256 -17.34685 -16.90328 -16.27418 -15.98284 -15.72967 -15.32833 -15.23390 -14.89133 -14.26527 -13.57035 -13.52306 -13.19472 -12.96295 -12.83427 -12.52689 -12.34356 -12.14029 -11.83485 -11.82189 -11.00248 -10.78227 -9.67255 -8.94925 -8.42611 -6.10806 0.52019 0.76898 1.33538 1.44733 1.49730 2.18274 2.83788 3.16847 3.49842 3.79076 3.94932 3.99358 4.24407 4.30852 4.37055 4.59098 4.67001 4.83015 5.05476 5.08074 5.18115 5.25092 5.28774 5.65370 5.73601 5.77580 6.04132 6.25636 7.00249 7.83325 8.78837 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.012021 C = 0.009256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.986519 B = 2328.704513 C = 3024.492044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.118 0.882 4 F -0.229 7.229 5 C -0.217 4.217 6 C -0.057 4.057 7 C -0.196 4.196 8 C -0.070 4.070 9 C -0.257 4.257 10 C 0.121 3.879 11 O -0.205 6.205 12 C -0.420 4.420 13 H 0.097 0.903 14 C -0.020 4.020 15 N -0.911 5.911 16 Si 1.016 2.984 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.258 1.258 20 H 0.028 0.972 21 H 0.075 0.925 22 H 0.098 0.902 23 H 0.160 0.840 24 H 0.155 0.845 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 6.778 -8.820 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 H 0.135 0.865 4 F -0.210 7.210 5 C -0.219 4.219 6 C -0.075 4.075 7 C -0.214 4.214 8 C -0.088 4.088 9 C -0.276 4.276 10 C 0.069 3.931 11 O -0.110 6.110 12 C -0.497 4.497 13 H 0.114 0.886 14 C -0.218 4.218 15 N -0.548 5.548 16 Si 0.835 3.165 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.182 1.182 20 H 0.047 0.953 21 H 0.094 0.906 22 H 0.117 0.883 23 H 0.178 0.822 24 H 0.172 0.828 25 H 0.161 0.839 26 H 0.133 0.867 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.902 6.772 -8.348 10.787 hybrid contribution 0.009 -1.238 0.392 1.299 sum 0.910 5.534 -7.956 9.734 Atomic orbital electron populations 1.22245 0.93691 1.01812 1.04117 1.20462 0.95268 0.95218 0.79010 0.86460 1.92855 1.90467 1.84252 1.53458 1.19867 1.12133 0.90781 0.99085 1.21007 0.95286 1.00445 0.90758 1.21175 1.06541 0.94047 0.99639 1.21222 0.96041 0.94948 0.96539 1.21316 1.10401 1.00690 0.95232 1.19831 0.93457 0.92384 0.87382 1.84084 1.76874 1.19441 1.30624 1.21792 1.45401 0.79124 1.03361 0.88556 1.26535 0.95514 1.05800 0.93974 1.70229 1.41493 1.38127 1.04999 0.84701 0.79571 0.73748 0.78490 1.18383 1.19598 1.18210 0.95297 0.90567 0.88318 0.82207 0.82774 0.83922 0.86722 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.76 9.63 71.98 0.69 -5.07 15 2 C 0.14 5.34 4.06 29.85 0.12 5.46 15 3 H 0.12 3.45 8.05 -2.39 -0.02 3.43 15 4 F -0.23 -11.86 15.33 44.97 0.69 -11.17 15 5 C -0.22 -9.01 5.05 -19.74 -0.10 -9.11 15 6 C -0.06 -1.79 9.68 22.25 0.22 -1.57 15 7 C -0.20 -5.73 10.04 22.30 0.22 -5.51 15 8 C -0.07 -2.37 10.04 22.25 0.22 -2.14 15 9 C -0.26 -11.46 9.17 22.39 0.21 -11.25 15 10 C 0.12 6.14 6.53 22.58 0.15 6.28 15 11 O -0.21 -12.52 7.89 -22.82 -0.18 -12.70 15 12 C -0.42 -25.16 9.49 67.92 0.64 -24.52 15 13 H 0.10 5.32 5.20 -2.91 -0.02 5.31 15 14 C -0.02 -1.16 5.49 84.83 0.47 -0.70 15 15 N -0.91 -57.38 13.67 21.61 0.30 -57.08 15 16 Si 1.02 44.02 29.55 68.60 2.03 46.05 15 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 19 H -0.26 -10.47 7.11 99.48 0.71 -9.77 15 20 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.10 2.75 8.14 -2.38 -0.02 2.73 15 23 H 0.16 3.50 8.06 -2.91 -0.02 3.47 15 24 H 0.15 3.19 8.06 -2.91 -0.02 3.17 15 25 H 0.14 3.80 8.06 -2.91 -0.02 3.77 15 26 H 0.11 5.25 5.64 -2.91 -0.02 5.23 15 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 15 Total: -1.00 -74.48 242.74 6.84 -67.63 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.17 Total: 15.38 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 2.84 Total: -48.12 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.30 Total: -57.08 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.18 Total: -12.70 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 0.69 Total: -11.17 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -74.48 6.84 -67.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322298.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.250 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds