Wall clock time and date at job start Mon Mar 30 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47105 * 2 1 4 4 F 1.39892 * 109.47327 * 239.99886 * 2 1 3 5 5 C 1.50697 * 109.47175 * 119.99631 * 2 1 3 6 6 C 1.38124 * 120.03693 * 94.99632 * 5 2 1 7 7 C 1.38277 * 120.07194 * 180.02562 * 6 5 2 8 8 C 1.38324 * 120.13888 * 0.02562 * 7 6 5 9 9 C 1.38085 * 120.06743 * 0.02562 * 8 7 6 10 10 C 1.38862 * 120.03744 * 275.02542 * 5 2 1 11 11 O 1.35759 * 120.06584 * 359.95180 * 10 5 2 12 12 C 1.34823 * 116.99944 * 174.42275 * 11 10 5 13 13 H 1.08006 * 120.00076 * 5.07035 * 12 11 10 14 14 C 1.38657 * 120.00257 * 185.06239 * 12 11 10 15 15 N 1.31556 * 119.99552 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47016 * 60.00221 * 16 14 12 18 18 H 1.48495 * 109.46788 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47137 * 300.00100 * 16 14 12 20 20 H 1.08998 * 109.47027 * 300.00703 * 1 2 3 21 21 H 1.09000 * 109.47036 * 60.00312 * 1 2 3 22 22 H 1.08996 * 109.47393 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.96168 * 359.75197 * 6 5 2 24 24 H 1.07995 * 119.92863 * 180.02562 * 7 6 5 25 25 H 1.07998 * 119.96739 * 180.02562 * 8 7 6 26 26 H 1.07999 * 120.03449 * 180.02562 * 9 8 7 27 27 H 0.97003 * 119.99994 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0324 -0.7103 1.2305 6 6 2.3610 -2.0505 1.1694 7 6 2.8215 -2.7031 2.2982 8 6 2.9541 -2.0167 3.4918 9 6 2.6262 -0.6771 3.5596 10 6 2.1648 -0.0184 2.4271 11 8 1.8429 1.2990 2.4903 12 6 1.8840 1.8815 3.7055 13 1 2.2420 1.3253 4.5592 14 6 1.4667 3.1948 3.8592 15 7 1.0302 3.8723 2.8194 16 14 1.5242 4.0022 5.5428 17 1 2.9233 4.0097 6.0406 18 1 1.0286 5.3981 5.4394 19 1 0.6672 3.2406 6.4865 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 2.2540 -2.5903 0.2401 24 1 3.0782 -3.7509 2.2477 25 1 3.3144 -2.5291 4.3715 26 1 2.7303 -0.1416 4.4916 27 1 0.7379 4.7910 2.9269 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322299.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:23 Heat of formation + Delta-G solvation = -79.462236 kcal Electronic energy + Delta-G solvation = -13612.916763 eV Core-core repulsion = 11056.883424 eV Total energy + Delta-G solvation = -2556.033339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.67250 -40.84219 -38.13589 -34.44955 -33.99363 -30.90040 -29.98704 -27.35831 -24.84575 -23.23483 -21.93359 -19.83017 -18.88732 -17.39318 -17.09844 -16.27355 -16.18443 -15.73399 -15.43713 -15.29937 -15.04577 -14.29496 -13.73399 -13.53893 -13.23904 -13.04438 -12.85476 -12.55155 -12.42878 -12.16238 -12.07681 -11.78629 -11.11156 -10.79478 -9.70901 -9.00648 -8.46502 -6.14212 0.47819 0.71250 1.36563 1.46441 1.51741 2.17636 2.81091 3.12617 3.42989 3.56666 3.77947 4.06880 4.14351 4.25433 4.29418 4.56567 4.63319 4.78660 4.95824 5.05906 5.14899 5.20051 5.25862 5.62635 5.69296 5.73476 6.01115 6.19886 6.98353 7.74761 8.75310 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.033938 B = 0.010704 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.826716 B = 2615.170155 C = 3305.181614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.066 0.934 4 F -0.215 7.215 5 C -0.209 4.209 6 C -0.064 4.064 7 C -0.191 4.191 8 C -0.067 4.067 9 C -0.247 4.247 10 C 0.127 3.873 11 O -0.218 6.218 12 C -0.416 4.416 13 H 0.101 0.899 14 C -0.017 4.017 15 N -0.915 5.915 16 Si 1.015 2.985 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.258 1.258 20 H 0.055 0.945 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.141 0.859 24 H 0.152 0.848 25 H 0.148 0.852 26 H 0.123 0.877 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -8.824 0.414 8.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.112 3.888 3 H 0.084 0.916 4 F -0.196 7.196 5 C -0.210 4.210 6 C -0.082 4.082 7 C -0.210 4.210 8 C -0.085 4.085 9 C -0.266 4.266 10 C 0.076 3.924 11 O -0.124 6.124 12 C -0.492 4.492 13 H 0.118 0.882 14 C -0.215 4.215 15 N -0.552 5.552 16 Si 0.834 3.166 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.183 1.183 20 H 0.074 0.926 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.170 0.830 25 H 0.166 0.834 26 H 0.141 0.859 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.838 -8.468 0.155 8.511 hybrid contribution 0.043 0.756 0.587 0.958 sum 0.881 -7.712 0.741 7.797 Atomic orbital electron populations 1.22148 0.92554 1.03516 1.03075 1.19889 0.95629 0.94234 0.79022 0.91617 1.92728 1.90618 1.83485 1.52803 1.19548 1.12152 0.95817 0.93520 1.20907 0.95940 0.91678 0.99659 1.21156 1.06245 1.01214 0.92358 1.21249 0.95870 0.92486 0.98910 1.21334 1.09556 0.97118 0.98591 1.19540 0.93734 0.84651 0.94452 1.83922 1.77504 1.18151 1.32818 1.21760 1.45440 0.96958 0.85016 0.88177 1.26482 0.95377 0.95889 1.03774 1.70157 1.41696 1.11127 1.32237 0.84698 0.79601 0.77275 0.75002 1.18367 1.19755 1.18254 0.92623 0.90299 0.90319 0.84132 0.83027 0.83433 0.85888 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 9.63 71.98 0.69 -4.97 15 2 C 0.15 6.08 3.91 29.85 0.12 6.19 15 3 H 0.07 3.05 7.70 -2.38 -0.02 3.03 15 4 F -0.22 -8.14 16.09 44.97 0.72 -7.42 15 5 C -0.21 -8.86 5.10 -19.74 -0.10 -8.96 15 6 C -0.06 -2.23 9.40 22.25 0.21 -2.03 15 7 C -0.19 -5.91 10.04 22.30 0.22 -5.69 15 8 C -0.07 -2.25 10.04 22.25 0.22 -2.02 15 9 C -0.25 -10.50 9.17 22.39 0.21 -10.30 15 10 C 0.13 6.18 6.62 22.58 0.15 6.33 15 11 O -0.22 -12.49 8.90 -22.77 -0.20 -12.69 15 12 C -0.42 -23.39 9.49 67.92 0.64 -22.74 15 13 H 0.10 5.18 5.20 -2.91 -0.02 5.16 15 14 C -0.02 -0.93 5.49 84.83 0.47 -0.46 15 15 N -0.91 -54.26 13.67 21.61 0.30 -53.97 15 16 Si 1.01 41.74 29.55 68.60 2.03 43.77 15 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 20 H 0.05 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.08 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.14 4.22 7.48 -2.91 -0.02 4.20 15 24 H 0.15 3.45 8.06 -2.91 -0.02 3.42 15 25 H 0.15 3.77 8.06 -2.91 -0.02 3.75 15 26 H 0.12 5.26 5.64 -2.91 -0.02 5.25 15 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 Total: -1.00 -64.38 243.30 6.85 -57.54 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.17 Total: 17.43 kcal Atomic # 6 Polarization: -47.49 SS G_CDS: 2.83 Total: -44.66 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.30 Total: -53.97 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.20 Total: -12.69 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.72 Total: -7.42 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -64.38 6.85 -57.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322299.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.926 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds