Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99689 * 2 1 4 4 H 1.48493 * 109.47181 * 240.00077 * 3 2 1 5 5 H 1.48498 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46925 * 120.00068 * 3 2 1 7 7 C 1.37873 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99756 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00286 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.35900 * 116.99823 * 179.97438 * 10 9 7 12 12 C 1.38731 * 120.05342 * 180.02562 * 11 10 9 13 13 C 1.38154 * 119.94058 * 180.02562 * 12 11 10 14 14 C 1.38261 * 120.05655 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.94251 * 179.97438 * 14 13 12 16 16 F 1.39901 * 109.47086 * 270.00417 * 15 14 13 17 17 C 1.38259 * 120.11397 * 0.25346 * 14 13 12 18 18 C 1.38153 * 120.05477 * 359.44983 * 17 14 13 19 19 H 0.97005 * 120.00111 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47034 * 59.99377 * 9 7 2 21 21 H 1.09002 * 109.46720 * 300.00030 * 9 7 2 22 22 H 1.07998 * 120.03388 * 0.02562 * 12 11 10 23 23 H 1.08005 * 119.97017 * 180.02562 * 13 12 11 24 24 H 1.09002 * 109.47152 * 150.00085 * 15 14 13 25 25 H 1.09001 * 109.46980 * 30.00185 * 15 14 13 26 26 H 1.07997 * 119.97526 * 179.70243 * 17 14 13 27 27 H 1.07998 * 120.02796 * 180.24700 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5852 -0.0027 11 6 1.6603 -4.8410 -0.0033 12 6 2.5044 -5.9420 -0.0037 13 6 1.9739 -7.2176 -0.0048 14 6 0.6030 -7.3974 -0.0060 15 6 0.0271 -8.7901 -0.0079 16 9 -0.1500 -9.2197 -1.3274 17 6 -0.2403 -6.3019 -0.0115 18 6 0.2851 -5.0242 -0.0042 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5562 -0.8919 21 1 0.6241 -2.5574 0.8880 22 1 3.5753 -5.8021 -0.0031 23 1 2.6306 -8.0751 -0.0047 24 1 -0.9346 -8.7862 0.5052 25 1 0.7102 -9.4664 0.5059 26 1 -1.3107 -6.4449 -0.0173 27 1 -0.3740 -4.1687 -0.0044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327977.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = -78.824440 kcal Electronic energy + Delta-G solvation = -12904.719758 eV Core-core repulsion = 10348.714076 eV Total energy + Delta-G solvation = -2556.005682 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -47.52254 -39.43395 -36.87393 -32.99981 -31.09102 -30.65452 -27.81690 -25.45204 -23.48790 -21.94351 -20.70887 -17.53236 -16.62776 -15.98124 -15.86401 -15.72539 -14.87823 -14.64301 -14.38328 -14.08771 -13.14221 -13.06686 -12.63374 -12.06375 -11.83067 -11.11492 -11.04012 -11.03971 -10.80994 -10.55127 -10.20658 -10.20226 -9.33876 -8.70052 -8.61174 -7.60821 -6.28285 -4.32515 1.68625 1.72291 3.23983 3.26961 3.30202 4.07968 4.10859 4.46895 4.75357 4.81756 4.94070 5.08868 5.24069 5.34715 5.69346 5.72869 5.87601 6.05748 6.33144 6.55723 6.70000 6.78435 6.93140 7.09113 7.18617 7.63886 7.90792 8.40178 8.79218 9.32884 10.82875 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.081681 B = 0.005771 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.716087 B = 4850.607584 C = 5099.930835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.192 3.808 10 O -0.315 6.315 11 C 0.165 3.835 12 C -0.173 4.173 13 C -0.061 4.061 14 C -0.203 4.203 15 C 0.116 3.884 16 F -0.218 7.218 17 C -0.056 4.056 18 C -0.215 4.215 19 H 0.268 0.732 20 H 0.023 0.977 21 H 0.023 0.977 22 H 0.128 0.872 23 H 0.123 0.877 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -12.987 1.194 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.227 6.227 11 C 0.116 3.884 12 C -0.192 4.192 13 C -0.079 4.079 14 C -0.204 4.204 15 C 0.062 3.938 16 F -0.200 7.200 17 C -0.075 4.075 18 C -0.234 4.234 19 H 0.078 0.922 20 H 0.040 0.960 21 H 0.041 0.959 22 H 0.146 0.854 23 H 0.141 0.859 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.138 0.862 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.076 -12.776 1.164 12.830 hybrid contribution 0.042 0.994 -0.056 0.997 sum 0.118 -11.782 1.108 11.835 Atomic orbital electron populations 1.69938 1.06145 1.27798 1.49352 1.24939 0.95063 0.99569 0.94586 0.86285 0.79275 0.81311 0.79020 1.19812 1.20955 1.19822 1.20937 0.94269 0.88722 1.52538 0.91141 1.20685 0.88664 0.81743 0.96986 1.86134 1.39240 1.11839 1.85515 1.19369 0.91699 0.86597 0.90739 1.20424 0.99779 0.90396 1.08575 1.20687 0.93958 0.96259 0.97013 1.19899 0.94292 0.94812 1.11403 1.20652 1.01548 0.92521 0.79101 1.92788 1.96942 1.90998 1.39225 1.20768 0.99064 0.91553 0.96079 1.21477 0.94934 0.98416 1.08563 0.92215 0.95952 0.95942 0.85370 0.85936 0.90492 0.90501 0.86185 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.53 -15.03 9.43 -34.44 -0.32 -15.35 15 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 15 9 C 0.19 5.09 4.49 36.00 0.16 5.25 15 10 O -0.31 -7.65 10.12 -19.43 -0.20 -7.85 15 11 C 0.16 3.38 6.69 -39.22 -0.26 3.11 15 12 C -0.17 -2.98 9.99 -39.43 -0.39 -3.37 15 13 C -0.06 -0.89 9.69 -39.60 -0.38 -1.27 15 14 C -0.20 -2.94 5.60 -104.60 -0.59 -3.53 15 15 C 0.12 1.31 7.67 36.01 0.28 1.59 15 16 F -0.22 -3.02 17.34 2.25 0.04 -2.98 15 17 C -0.06 -0.89 9.69 -39.61 -0.38 -1.28 15 18 C -0.22 -4.09 9.04 -39.43 -0.36 -4.45 15 19 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 20 H 0.02 0.62 7.66 -51.93 -0.40 0.22 15 21 H 0.02 0.62 7.66 -51.93 -0.40 0.22 15 22 H 0.13 2.02 8.06 -52.49 -0.42 1.59 15 23 H 0.12 1.40 8.06 -52.48 -0.42 0.97 15 24 H 0.08 0.71 8.09 -51.93 -0.42 0.29 15 25 H 0.08 0.68 8.08 -51.93 -0.42 0.26 15 26 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.14 2.71 6.30 -52.49 -0.33 2.37 15 LS Contribution 247.45 15.07 3.73 3.73 Total: -1.00 -29.93 247.45 -5.84 -35.77 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -2.78 Total: -2.07 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -2.35 Total: -17.70 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.74 Total: -25.06 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.20 Total: -7.85 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.93 -5.84 -35.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327977.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.052 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds