Wall clock time and date at job start Mon Mar 30 2020 02:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99689 * 2 1 4 4 H 1.48493 * 109.47181 * 240.00077 * 3 2 1 5 5 H 1.48498 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46925 * 120.00068 * 3 2 1 7 7 C 1.37873 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99756 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00286 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.35900 * 116.99823 * 179.97438 * 10 9 7 12 12 C 1.38731 * 120.05342 * 180.02562 * 11 10 9 13 13 C 1.38154 * 119.94058 * 180.02562 * 12 11 10 14 14 C 1.38261 * 120.05655 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.94251 * 179.97438 * 14 13 12 16 16 F 1.39901 * 109.47086 * 270.00417 * 15 14 13 17 17 C 1.38259 * 120.11397 * 0.25346 * 14 13 12 18 18 C 1.38153 * 120.05477 * 359.44983 * 17 14 13 19 19 H 0.97005 * 120.00111 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47034 * 59.99377 * 9 7 2 21 21 H 1.09002 * 109.46720 * 300.00030 * 9 7 2 22 22 H 1.07998 * 120.03388 * 0.02562 * 12 11 10 23 23 H 1.08005 * 119.97017 * 180.02562 * 13 12 11 24 24 H 1.09002 * 109.47152 * 150.00085 * 15 14 13 25 25 H 1.09001 * 109.46980 * 30.00185 * 15 14 13 26 26 H 1.07997 * 119.97526 * 179.70243 * 17 14 13 27 27 H 1.07998 * 120.02796 * 180.24700 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5852 -0.0027 11 6 1.6603 -4.8410 -0.0033 12 6 2.5044 -5.9420 -0.0037 13 6 1.9739 -7.2176 -0.0048 14 6 0.6030 -7.3974 -0.0060 15 6 0.0271 -8.7901 -0.0079 16 9 -0.1500 -9.2197 -1.3274 17 6 -0.2403 -6.3019 -0.0115 18 6 0.2851 -5.0242 -0.0042 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5562 -0.8919 21 1 0.6241 -2.5574 0.8880 22 1 3.5753 -5.8021 -0.0031 23 1 2.6306 -8.0751 -0.0047 24 1 -0.9346 -8.7862 0.5052 25 1 0.7102 -9.4664 0.5059 26 1 -1.3107 -6.4449 -0.0173 27 1 -0.3740 -4.1687 -0.0044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327977.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:04 Heat of formation + Delta-G solvation = -96.692160 kcal Electronic energy + Delta-G solvation = -12905.494561 eV Core-core repulsion = 10348.714076 eV Total energy + Delta-G solvation = -2556.780485 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -48.50139 -40.94256 -38.44424 -35.11485 -32.44084 -31.98710 -29.81125 -26.70051 -25.33195 -23.41572 -22.10030 -19.25002 -18.53653 -17.30221 -17.09658 -16.74117 -16.53993 -16.46589 -15.88759 -15.40984 -14.63477 -14.39137 -14.18156 -13.66212 -13.54108 -13.04836 -12.83098 -12.37118 -12.01233 -11.99240 -11.91023 -11.75756 -11.37423 -10.74339 -9.99706 -9.13179 -8.42201 -6.57297 0.35492 0.36571 1.37935 1.42779 1.51340 2.24864 2.69341 2.72590 2.92521 3.67424 3.80447 3.94276 4.14483 4.21213 4.39559 4.50288 4.70099 4.74111 4.87780 4.91978 5.04870 5.24235 5.38993 5.49898 5.51796 5.79390 5.86863 6.46289 6.74130 7.14931 8.69860 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.081681 B = 0.005771 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.716087 B = 4850.607584 C = 5099.930835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.562 4.562 8 H 0.067 0.933 9 C 0.212 3.788 10 O -0.337 6.337 11 C 0.116 3.884 12 C -0.175 4.175 13 C -0.052 4.052 14 C -0.191 4.191 15 C 0.115 3.885 16 F -0.232 7.232 17 C -0.059 4.059 18 C -0.234 4.234 19 H 0.275 0.725 20 H 0.000 1.000 21 H 0.003 0.997 22 H 0.140 0.860 23 H 0.166 0.834 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -14.581 1.442 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.086 0.914 9 C 0.138 3.862 10 O -0.251 6.251 11 C 0.070 3.930 12 C -0.194 4.194 13 C -0.070 4.070 14 C -0.192 4.192 15 C 0.061 3.939 16 F -0.213 7.213 17 C -0.077 4.077 18 C -0.253 4.253 19 H 0.084 0.916 20 H 0.018 0.982 21 H 0.020 0.980 22 H 0.157 0.843 23 H 0.184 0.816 24 H 0.120 0.880 25 H 0.131 0.869 26 H 0.164 0.836 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.606 -14.409 1.412 14.490 hybrid contribution -0.180 1.280 -0.128 1.299 sum 0.426 -13.129 1.284 13.198 Atomic orbital electron populations 1.70048 1.07786 1.29201 1.49307 1.25987 0.96046 1.03437 0.93324 0.85143 0.78072 0.76147 0.79538 1.18882 1.19726 1.18789 1.21307 0.94438 0.90177 1.53967 0.91437 1.20189 0.88422 0.82645 0.94908 1.86044 1.38856 1.12998 1.87220 1.19828 0.93094 0.85842 0.94272 1.20718 1.00157 0.90488 1.07994 1.21195 0.94812 0.96219 0.94730 1.20429 0.94261 0.96335 1.08175 1.20927 1.03745 0.90607 0.78670 1.92768 1.97101 1.90916 1.40525 1.21093 1.00835 0.90542 0.95203 1.21437 0.94271 0.99398 1.10158 0.91639 0.98182 0.97957 0.84255 0.81612 0.87979 0.86944 0.83608 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.49 15 2 C 0.01 0.67 5.46 84.65 0.46 1.13 15 3 Si 0.99 43.61 29.54 68.60 2.03 45.64 15 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.56 -33.37 9.43 25.60 0.24 -33.12 15 8 H 0.07 3.93 7.81 -2.91 -0.02 3.91 15 9 C 0.21 12.03 4.49 71.24 0.32 12.35 15 10 O -0.34 -17.41 10.12 -92.42 -0.94 -18.35 15 11 C 0.12 4.96 6.69 22.51 0.15 5.11 15 12 C -0.17 -5.90 9.99 22.37 0.22 -5.68 15 13 C -0.05 -1.35 9.69 22.26 0.22 -1.13 15 14 C -0.19 -4.93 5.60 -19.85 -0.11 -5.04 15 15 C 0.11 2.04 7.67 71.24 0.55 2.58 15 16 F -0.23 -5.54 17.34 44.97 0.78 -4.76 15 17 C -0.06 -1.79 9.69 22.25 0.22 -1.58 15 18 C -0.23 -9.29 9.04 22.37 0.20 -9.09 15 19 H 0.27 15.03 8.31 -92.70 -0.77 14.26 15 20 H 0.00 0.02 7.66 -2.39 -0.02 0.01 15 21 H 0.00 0.16 7.66 -2.39 -0.02 0.14 15 22 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 23 H 0.17 2.89 8.06 -2.91 -0.02 2.87 15 24 H 0.10 1.37 8.09 -2.39 -0.02 1.35 15 25 H 0.11 1.30 8.08 -2.39 -0.02 1.28 15 26 H 0.15 3.60 8.06 -2.91 -0.02 3.57 15 27 H 0.11 4.87 6.30 -2.91 -0.02 4.85 15 Total: -1.00 -67.41 247.45 5.79 -61.63 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.16 Total: 4.80 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 2.47 Total: -34.47 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.94 Total: -18.35 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.76 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -67.41 5.79 -61.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327977.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.067 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds