Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46688 * 2 1 4 4 F 1.39900 * 109.47360 * 119.99849 * 2 1 3 5 5 C 1.50700 * 109.47160 * 239.99657 * 2 1 3 6 6 C 1.38322 * 119.96731 * 294.97914 * 5 2 1 7 7 C 1.38278 * 120.13646 * 179.97438 * 6 5 2 8 8 C 1.38118 * 120.07168 * 0.02562 * 7 6 5 9 9 C 1.38858 * 119.93004 * 359.78497 * 8 7 6 10 10 O 1.35746 * 120.07005 * 180.25802 * 9 8 7 11 11 C 1.34828 * 117.00187 * 354.66396 * 10 9 8 12 12 H 1.08005 * 120.00113 * 5.07388 * 11 10 9 13 13 C 1.38658 * 120.00325 * 185.07349 * 11 10 9 14 14 N 1.31561 * 119.99899 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47126 * 60.00119 * 15 13 11 17 17 H 1.48505 * 109.47137 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47325 * 300.00136 * 15 13 11 19 19 C 1.38077 * 119.96057 * 114.99873 * 5 2 1 20 20 H 1.09007 * 109.46846 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47276 * 300.00026 * 1 2 3 22 22 H 1.09000 * 109.47344 * 60.00060 * 1 2 3 23 23 H 1.07998 * 119.93357 * 0.02562 * 6 5 2 24 24 H 1.08005 * 119.96139 * 180.02562 * 7 6 5 25 25 H 1.08004 * 120.03421 * 180.02562 * 8 7 6 26 26 H 0.97001 * 120.00026 * 179.97438 * 14 13 11 27 27 H 1.08000 * 120.04009 * 359.95629 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0324 -0.7105 -1.2304 6 6 1.7856 -2.0612 -1.3974 7 6 2.2444 -2.7165 -2.5253 8 6 2.9514 -2.0238 -3.4887 9 6 3.1973 -0.6669 -3.3258 10 8 3.8873 0.0178 -4.2733 11 6 4.4013 -0.6983 -5.2935 12 1 4.1869 -1.7538 -5.3744 13 6 5.2053 -0.0799 -6.2389 14 7 5.4670 1.2057 -6.1402 15 14 5.9168 -1.0720 -7.6527 16 1 4.8110 -1.6592 -8.4512 17 1 6.7354 -0.1846 -8.5175 18 1 6.7702 -2.1609 -7.1132 19 6 2.7388 -0.0124 -2.1896 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.2327 -2.6050 -0.6458 24 1 2.0498 -3.7712 -2.6531 25 1 3.3091 -2.5361 -4.3696 26 1 6.0297 1.6382 -6.8013 27 1 2.9309 1.0423 -2.0589 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261333712.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = -62.869813 kcal Electronic energy + Delta-G solvation = -13207.082084 eV Core-core repulsion = 10651.768246 eV Total energy + Delta-G solvation = -2555.313837 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.37048 -39.05665 -36.66103 -32.75089 -32.23090 -29.63891 -28.33244 -25.45600 -23.41792 -21.79252 -20.44374 -17.83872 -17.11107 -16.05001 -15.20501 -14.95697 -14.80725 -14.31415 -14.14082 -13.61156 -13.09225 -12.62204 -12.53234 -12.16152 -11.73610 -11.60307 -11.35361 -10.99493 -10.81613 -10.62088 -10.50074 -10.32097 -9.39060 -8.87166 -8.22438 -7.29877 -6.47642 -4.07231 2.01060 2.31064 3.11501 3.12868 3.15568 3.93698 4.45523 4.70466 4.89052 5.04778 5.12174 5.34209 5.39840 5.63053 5.73637 5.89293 6.06987 6.10645 6.15354 6.27300 6.58484 6.83324 7.01232 7.18727 7.29849 7.36974 7.73046 7.96603 8.97672 9.66414 10.70207 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.061729 B = 0.007116 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.489800 B = 3933.763581 C = 4204.401634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 H 0.087 0.913 4 F -0.214 7.214 5 C -0.087 4.087 6 C -0.191 4.191 7 C -0.075 4.075 8 C -0.227 4.227 9 C 0.151 3.849 10 O -0.177 6.177 11 C -0.394 4.394 12 H 0.092 0.908 13 C 0.040 3.960 14 N -0.862 5.862 15 Si 0.942 3.058 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.270 1.270 19 C -0.174 4.174 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.271 0.729 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 -3.574 6.619 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.099 3.901 3 H 0.105 0.895 4 F -0.195 7.195 5 C -0.087 4.087 6 C -0.210 4.210 7 C -0.094 4.094 8 C -0.246 4.246 9 C 0.098 3.902 10 O -0.080 6.080 11 C -0.470 4.470 12 H 0.109 0.891 13 C -0.164 4.164 14 N -0.497 5.497 15 Si 0.766 3.234 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.194 4.194 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.095 0.905 23 H 0.125 0.875 24 H 0.128 0.872 25 H 0.146 0.854 26 H 0.081 0.919 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.387 -3.157 6.477 9.628 hybrid contribution 0.409 -0.625 -0.722 1.039 sum -5.977 -3.782 5.756 9.119 Atomic orbital electron populations 1.22344 0.93960 1.03578 1.03021 1.20313 0.94521 0.95238 0.79986 0.89527 1.92805 1.90428 1.83658 1.52570 1.19612 0.99320 0.94602 0.95190 1.20365 1.07230 0.93938 0.99480 1.20736 0.96519 0.98550 0.93553 1.21236 1.06489 0.94881 1.02018 1.19277 0.91435 0.90563 0.88961 1.83974 1.59465 1.34816 1.29769 1.21283 1.29799 0.93977 1.01942 0.89095 1.25292 0.96277 0.96201 0.98669 1.70029 1.35170 1.09265 1.35242 0.85773 0.79089 0.78856 0.79670 1.19481 1.20244 1.19478 1.19995 1.05275 1.00007 0.94084 0.91366 0.91747 0.90515 0.87455 0.87201 0.85393 0.91919 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.51 37.16 0.35 -1.73 15 2 C 0.14 2.04 4.17 -27.88 -0.12 1.92 15 3 H 0.09 1.18 7.88 -51.93 -0.41 0.77 15 4 F -0.21 -3.52 16.93 2.25 0.04 -3.48 15 5 C -0.09 -1.59 5.04 -104.65 -0.53 -2.12 15 6 C -0.19 -3.44 9.15 -39.54 -0.36 -3.80 15 7 C -0.08 -1.41 10.04 -39.61 -0.40 -1.80 15 8 C -0.23 -4.95 9.17 -39.40 -0.36 -5.32 15 9 C 0.15 3.67 6.65 -39.10 -0.26 3.41 15 10 O -0.18 -5.03 9.76 0.07 0.00 -5.03 15 11 C -0.39 -10.97 9.49 30.89 0.29 -10.68 15 12 H 0.09 2.33 5.20 -52.48 -0.27 2.06 15 13 C 0.04 1.10 5.49 -17.51 -0.10 1.00 15 14 N -0.86 -25.16 13.67 55.48 0.76 -24.40 15 15 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 15 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 19 C -0.17 -3.69 9.62 -39.39 -0.38 -4.07 15 20 H 0.07 0.82 7.70 -51.93 -0.40 0.42 15 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.11 1.69 7.87 -52.49 -0.41 1.28 15 24 H 0.11 1.71 8.06 -52.48 -0.42 1.29 15 25 H 0.13 2.76 5.64 -52.48 -0.30 2.47 15 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 27 H 0.12 2.39 7.95 -52.49 -0.42 1.97 15 LS Contribution 244.45 15.07 3.68 3.68 Total: -1.00 -30.14 244.45 -5.01 -35.15 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.61 Total: 1.90 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -1.85 Total: -23.18 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.76 Total: -24.40 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: 0.00 Total: -5.03 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.14 -5.01 -35.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333712.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.720 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds