Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46688 * 2 1 4 4 F 1.39900 * 109.47360 * 119.99849 * 2 1 3 5 5 C 1.50700 * 109.47160 * 239.99657 * 2 1 3 6 6 C 1.38322 * 119.96731 * 294.97914 * 5 2 1 7 7 C 1.38278 * 120.13646 * 179.97438 * 6 5 2 8 8 C 1.38118 * 120.07168 * 0.02562 * 7 6 5 9 9 C 1.38858 * 119.93004 * 359.78497 * 8 7 6 10 10 O 1.35746 * 120.07005 * 180.25802 * 9 8 7 11 11 C 1.34828 * 117.00187 * 354.66396 * 10 9 8 12 12 H 1.08005 * 120.00113 * 5.07388 * 11 10 9 13 13 C 1.38658 * 120.00325 * 185.07349 * 11 10 9 14 14 N 1.31561 * 119.99899 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47126 * 60.00119 * 15 13 11 17 17 H 1.48505 * 109.47137 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47325 * 300.00136 * 15 13 11 19 19 C 1.38077 * 119.96057 * 114.99873 * 5 2 1 20 20 H 1.09007 * 109.46846 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47276 * 300.00026 * 1 2 3 22 22 H 1.09000 * 109.47344 * 60.00060 * 1 2 3 23 23 H 1.07998 * 119.93357 * 0.02562 * 6 5 2 24 24 H 1.08005 * 119.96139 * 180.02562 * 7 6 5 25 25 H 1.08004 * 120.03421 * 180.02562 * 8 7 6 26 26 H 0.97001 * 120.00026 * 179.97438 * 14 13 11 27 27 H 1.08000 * 120.04009 * 359.95629 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0324 -0.7105 -1.2304 6 6 1.7856 -2.0612 -1.3974 7 6 2.2444 -2.7165 -2.5253 8 6 2.9514 -2.0238 -3.4887 9 6 3.1973 -0.6669 -3.3258 10 8 3.8873 0.0178 -4.2733 11 6 4.4013 -0.6983 -5.2935 12 1 4.1869 -1.7538 -5.3744 13 6 5.2053 -0.0799 -6.2389 14 7 5.4670 1.2057 -6.1402 15 14 5.9168 -1.0720 -7.6527 16 1 4.8110 -1.6592 -8.4512 17 1 6.7354 -0.1846 -8.5175 18 1 6.7702 -2.1609 -7.1132 19 6 2.7388 -0.0124 -2.1896 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.2327 -2.6050 -0.6458 24 1 2.0498 -3.7712 -2.6531 25 1 3.3091 -2.5361 -4.3696 26 1 6.0297 1.6382 -6.8013 27 1 2.9309 1.0423 -2.0589 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333712.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = -80.878026 kcal Electronic energy + Delta-G solvation = -13207.862978 eV Core-core repulsion = 10651.768246 eV Total energy + Delta-G solvation = -2556.094732 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.63356 -40.80112 -38.40063 -34.41596 -33.90015 -31.21788 -29.81403 -27.41651 -24.79173 -23.39794 -22.03843 -19.63211 -18.89563 -17.37036 -16.83549 -16.51234 -16.05072 -16.01103 -15.81478 -15.49244 -14.62514 -14.26152 -13.74768 -13.55012 -13.33241 -13.00408 -12.96315 -12.55756 -12.38132 -12.19920 -11.88188 -11.78040 -11.19888 -10.81509 -9.80565 -9.06597 -8.48299 -6.17306 0.40628 0.66728 1.35262 1.45850 1.51528 2.16896 2.76474 3.09526 3.25505 3.70303 3.82402 3.93547 4.15811 4.27050 4.30018 4.46449 4.66182 4.81373 4.87191 5.08589 5.11793 5.20795 5.22094 5.58176 5.66305 5.66744 5.99580 6.12445 6.96040 7.74820 8.74520 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.061729 B = 0.007116 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.489800 B = 3933.763581 C = 4204.401634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 H 0.099 0.901 4 F -0.219 7.219 5 C -0.083 4.083 6 C -0.175 4.175 7 C -0.070 4.070 8 C -0.238 4.238 9 C 0.112 3.888 10 O -0.230 6.230 11 C -0.417 4.417 12 H 0.103 0.897 13 C -0.021 4.021 14 N -0.920 5.920 15 Si 1.019 2.981 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.258 1.258 19 C -0.187 4.187 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.143 0.857 24 H 0.150 0.850 25 H 0.123 0.877 26 H 0.273 0.727 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -5.511 7.748 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.097 3.903 3 H 0.116 0.884 4 F -0.200 7.200 5 C -0.084 4.084 6 C -0.193 4.193 7 C -0.088 4.088 8 C -0.257 4.257 9 C 0.062 3.938 10 O -0.136 6.136 11 C -0.493 4.493 12 H 0.120 0.880 13 C -0.219 4.219 14 N -0.558 5.558 15 Si 0.838 3.162 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.182 1.182 19 C -0.206 4.206 20 H 0.092 0.908 21 H 0.107 0.893 22 H 0.098 0.902 23 H 0.160 0.840 24 H 0.167 0.833 25 H 0.141 0.859 26 H 0.082 0.918 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.787 -5.122 7.654 12.060 hybrid contribution 0.652 -0.106 -0.786 1.027 sum -7.135 -5.228 6.867 11.198 Atomic orbital electron populations 1.22328 0.91162 1.04428 1.04432 1.20483 0.96589 0.95164 0.78049 0.88356 1.92798 1.90739 1.83836 1.52640 1.20047 0.97647 0.95123 0.95567 1.20892 1.05253 0.93770 0.99412 1.21160 0.94802 1.00347 0.92502 1.21385 1.07237 0.94147 1.02961 1.19848 0.92334 0.92079 0.89567 1.83939 1.61959 1.36413 1.31336 1.21803 1.30319 0.94725 1.02434 0.88002 1.26598 0.96377 0.97401 1.01531 1.70176 1.37112 1.11457 1.37017 0.84643 0.78541 0.77292 0.75719 1.18029 1.19630 1.18239 1.20231 1.05795 1.00417 0.94141 0.90792 0.89346 0.90214 0.83953 0.83270 0.85901 0.91772 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 9.51 71.98 0.68 -2.70 15 2 C 0.13 3.61 4.17 29.85 0.12 3.74 15 3 H 0.10 2.46 7.88 -2.39 -0.02 2.44 15 4 F -0.22 -6.50 16.93 44.97 0.76 -5.74 15 5 C -0.08 -2.88 5.04 -19.88 -0.10 -2.98 15 6 C -0.17 -5.63 9.15 22.30 0.20 -5.43 15 7 C -0.07 -2.41 10.04 22.25 0.22 -2.19 15 8 C -0.24 -10.34 9.17 22.39 0.21 -10.14 15 9 C 0.11 5.60 6.65 22.58 0.15 5.75 15 10 O -0.23 -13.83 9.76 -22.68 -0.22 -14.05 15 11 C -0.42 -24.20 9.49 67.92 0.64 -23.56 15 12 H 0.10 5.40 5.20 -2.91 -0.02 5.38 15 13 C -0.02 -1.21 5.49 84.83 0.47 -0.74 15 14 N -0.92 -56.25 13.67 21.61 0.30 -55.96 15 15 Si 1.02 42.50 29.55 68.60 2.03 44.53 15 16 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 19 C -0.19 -7.97 9.62 22.39 0.22 -7.76 15 20 H 0.07 1.43 7.70 -2.38 -0.02 1.41 15 21 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.14 3.69 7.87 -2.91 -0.02 3.66 15 24 H 0.15 3.95 8.06 -2.91 -0.02 3.92 15 25 H 0.12 5.36 5.64 -2.91 -0.02 5.34 15 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 27 H 0.12 4.91 7.95 -2.91 -0.02 4.89 15 Total: -1.00 -68.40 244.45 6.85 -61.55 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.17 Total: 15.68 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 2.82 Total: -46.01 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.30 Total: -55.96 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.22 Total: -14.05 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.76 Total: -5.74 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -68.40 6.85 -61.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333712.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.328 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds