Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48499 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47256 * 300.00400 * 3 2 1 6 6 H 1.48501 * 109.46858 * 60.00103 * 3 2 1 7 7 C 1.37870 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00178 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47198 * 180.02562 * 9 7 2 11 11 N 1.40027 * 126.25843 * 270.02508 * 10 9 7 12 12 N 1.23643 * 109.31613 * 179.97438 * 11 10 9 13 13 N 1.40025 * 109.31861 * 359.97438 * 12 11 10 14 14 C 1.46497 * 126.25987 * 179.74038 * 13 12 11 15 15 C 1.53005 * 117.50137 * 8.64188 * 14 13 12 16 16 C 1.53001 * 60.00137 * 252.51231 * 15 14 13 17 17 C 1.35051 * 126.25842 * 90.02325 * 10 9 7 18 18 O 1.21821 * 126.80197 * 0.02562 * 17 10 9 19 19 H 0.97004 * 120.00639 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47037 * 60.00313 * 9 7 2 21 21 H 1.09001 * 109.46993 * 299.99894 * 9 7 2 22 22 H 1.09002 * 115.55150 * 154.35801 * 14 13 12 23 23 H 1.08999 * 117.49284 * 0.02562 * 15 14 13 24 24 H 1.08994 * 117.49953 * 145.02202 * 15 14 13 25 25 H 1.08994 * 117.49695 * 252.50767 * 16 15 14 26 26 H 1.09000 * 117.51828 * 107.47713 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 7 2.7424 -4.2413 -1.1304 12 7 3.5110 -5.1403 -0.7699 13 7 3.5479 -5.1848 0.6291 14 6 4.3339 -6.1127 1.4460 15 6 5.3527 -6.9988 0.7264 16 6 4.0615 -7.6086 1.2758 17 6 2.7208 -4.2206 1.0877 18 8 2.4886 -3.9519 2.2530 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5575 0.8880 22 1 4.5909 -5.7584 2.4443 23 1 5.4383 -6.8910 -0.3549 24 1 6.2803 -7.2274 1.2510 25 1 4.1397 -8.2385 2.1619 26 1 3.2972 -7.9023 0.5563 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306192839.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = 83.492818 kcal Electronic energy + Delta-G solvation = -13517.911819 eV Core-core repulsion = 11021.157454 eV Total energy + Delta-G solvation = -2496.754365 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.79157 -39.09217 -38.47790 -36.08909 -34.25722 -33.26376 -29.76283 -25.87043 -25.68561 -23.47112 -22.99009 -22.35739 -19.10671 -18.69398 -17.92974 -17.47829 -17.21522 -16.28108 -15.68098 -15.08153 -14.64943 -14.64402 -14.04163 -13.86213 -13.55182 -13.33460 -12.77855 -12.72345 -12.42936 -12.35158 -11.94948 -11.86418 -11.38783 -10.74535 -10.73422 -10.09474 -8.37345 -6.53043 0.15039 0.22240 1.25987 1.38335 1.39360 1.52122 1.96105 2.34000 2.67858 2.94820 3.13043 3.65185 3.91938 4.00468 4.15193 4.54123 4.73464 4.79193 4.94047 5.03994 5.09569 5.19632 5.21962 5.54115 5.74286 6.48531 6.64739 6.81744 7.17389 8.71993 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.058755 B = 0.007652 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.438672 B = 3658.086558 C = 3671.076792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.563 4.563 8 H 0.052 0.948 9 C 0.290 3.710 10 N -0.448 5.448 11 N 0.014 4.986 12 N 0.012 4.988 13 N -0.441 5.441 14 C 0.057 3.943 15 C -0.141 4.141 16 C -0.165 4.165 17 C 0.630 3.370 18 O -0.570 6.570 19 H 0.275 0.725 20 H 0.056 0.944 21 H 0.040 0.960 22 H 0.154 0.846 23 H 0.105 0.895 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.998 -12.244 0.435 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.070 0.930 9 C 0.172 3.828 10 N -0.278 5.278 11 N 0.017 4.983 12 N 0.015 4.985 13 N -0.271 5.271 14 C -0.045 4.045 15 C -0.179 4.179 16 C -0.203 4.203 17 C 0.328 3.672 18 O -0.443 6.443 19 H 0.084 0.916 20 H 0.074 0.926 21 H 0.057 0.943 22 H 0.171 0.829 23 H 0.123 0.877 24 H 0.162 0.838 25 H 0.157 0.843 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.852 -12.167 0.163 15.047 hybrid contribution -0.199 1.219 0.717 1.428 sum 8.653 -10.948 0.879 13.982 Atomic orbital electron populations 1.69997 1.07310 1.29021 1.49110 1.25757 0.95908 1.02781 0.93420 0.85248 0.78366 0.78001 0.78480 1.19702 1.19066 1.19824 1.21499 0.93325 0.91161 1.54140 0.93009 1.19344 0.85168 0.79293 0.98988 1.50894 1.42143 1.32811 1.01995 1.79507 1.04672 1.01714 1.12442 1.79388 1.13012 1.13063 0.93079 1.49865 1.41766 1.32557 1.02873 1.22246 1.00747 0.86267 0.95197 1.23518 0.94745 0.97777 1.01864 1.23616 0.99785 0.92007 1.04911 1.17157 0.82178 0.82110 0.85788 1.91023 1.67328 1.70658 1.15258 0.91560 0.92637 0.94258 0.82866 0.87676 0.83848 0.84327 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 13.29 21.44 0.28 -52.21 15 2 C 0.02 1.26 5.46 84.65 0.46 1.72 15 3 Si 0.98 43.64 29.54 68.60 2.03 45.66 15 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 7 C -0.56 -32.19 9.39 25.60 0.24 -31.95 15 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 15 9 C 0.29 15.58 6.15 85.63 0.53 16.11 15 10 N -0.45 -21.55 3.61 -481.39 -1.74 -23.29 15 11 N 0.01 0.58 13.55 37.02 0.50 1.08 15 12 N 0.01 0.42 12.98 37.02 0.48 0.91 15 13 N -0.44 -15.99 3.95 -456.92 -1.80 -17.79 15 14 C 0.06 1.43 6.84 45.00 0.31 1.73 15 15 C -0.14 -2.33 10.19 30.60 0.31 -2.02 15 16 C -0.16 -2.90 10.46 30.60 0.32 -2.58 15 17 C 0.63 29.19 8.77 178.88 1.57 30.76 15 18 O -0.57 -29.56 17.83 -4.74 -0.08 -29.64 15 19 H 0.28 14.60 8.31 -92.71 -0.77 13.83 15 20 H 0.06 2.97 8.14 -2.39 -0.02 2.95 15 21 H 0.04 2.27 8.12 -2.39 -0.02 2.25 15 22 H 0.15 3.64 8.14 -2.39 -0.02 3.62 15 23 H 0.10 1.92 7.84 -2.39 -0.02 1.90 15 24 H 0.14 1.42 8.14 -2.39 -0.02 1.41 15 25 H 0.14 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 Total: -1.00 -66.81 246.09 4.60 -62.21 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: 1.19 Total: -0.71 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 3.74 Total: 13.79 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -2.27 Total: -91.31 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.08 Total: -29.64 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.81 4.60 -62.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192839.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.700 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds