Wall clock time and date at job start Mon Mar 30 2020 02:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99745 * 2 1 4 4 O 1.21795 * 120.00230 * 179.97438 * 3 2 1 5 5 C 1.41563 * 119.99986 * 359.97438 * 3 2 1 6 6 H 1.07994 * 119.99876 * 0.02562 * 5 3 2 7 7 C 1.40160 * 119.99875 * 179.97438 * 5 3 2 8 8 N 1.30613 * 120.00227 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99685 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46897 * 120.00267 * 9 7 5 12 12 H 1.48500 * 109.47173 * 240.00068 * 9 7 5 13 13 C 1.38213 * 120.00372 * 180.02562 * 2 1 3 14 14 N 1.31514 * 126.47895 * 174.28688 * 13 2 1 15 15 N 1.28545 * 109.76148 * 179.97438 * 14 13 2 16 16 C 1.30645 * 110.01558 * 359.72042 * 15 14 13 17 17 N 1.36412 * 107.37650 * 0.44076 * 16 15 14 18 18 C 1.46499 * 127.09561 * 179.84020 * 17 16 15 19 19 H 1.09006 * 109.47109 * 267.49793 * 1 2 3 20 20 H 1.08996 * 109.47428 * 27.49833 * 1 2 3 21 21 H 1.09003 * 109.47202 * 147.50505 * 1 2 3 22 22 H 0.96993 * 120.00276 * 179.97438 * 8 7 5 23 23 H 1.08004 * 126.31081 * 180.29857 * 16 15 14 24 24 H 1.09002 * 109.46668 * 264.54433 * 18 17 16 25 25 H 1.09005 * 109.46943 * 144.54777 * 18 17 16 26 26 H 1.08997 * 109.47907 * 24.54288 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3568 1.1673 0.0005 5 6 1.4310 2.3932 -0.0005 6 1 0.3510 2.3931 -0.0005 7 6 2.1317 3.6070 0.0000 8 7 3.4379 3.6071 0.0005 9 14 1.1976 5.2247 0.0000 10 1 -0.2624 4.9532 0.0000 11 1 1.5559 6.0031 1.2128 12 1 1.5567 6.0037 -1.2122 13 6 2.1561 -1.1969 -0.0005 14 7 3.4583 -1.3478 -0.1059 15 7 3.7554 -2.5979 -0.0691 16 6 2.6697 -3.3117 0.0668 17 7 1.6159 -2.4465 0.1088 18 6 0.1980 -2.7871 0.2489 19 1 -0.3634 -0.0449 1.0267 20 1 -0.3634 0.9115 -0.4745 21 1 -0.3634 -0.8668 -0.5521 22 1 3.9228 4.4471 0.0005 23 1 2.6161 -4.3885 0.1313 24 1 -0.2637 -2.8332 -0.7375 25 1 -0.3011 -2.0258 0.8485 26 1 0.1036 -3.7558 0.7397 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306216600.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:59 Heat of formation + Delta-G solvation = 47.473503 kcal Electronic energy + Delta-G solvation = -13916.983608 eV Core-core repulsion = 11418.667328 eV Total energy + Delta-G solvation = -2498.316279 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.69073 -39.92026 -36.71676 -35.27951 -34.62472 -31.15468 -28.90927 -28.73193 -26.84656 -24.07305 -22.85463 -21.19118 -18.65950 -18.01843 -17.67958 -17.45891 -16.67299 -16.02225 -15.41558 -15.34082 -14.63188 -14.32696 -14.22907 -13.54427 -13.22060 -12.78657 -12.74484 -12.32201 -12.13222 -11.94654 -11.40394 -11.00921 -10.97811 -10.84007 -9.84495 -8.91173 -8.38760 -7.04229 1.03112 1.34418 1.43196 1.45315 1.62147 2.09191 2.22825 2.48170 2.57816 3.62150 3.78344 3.98885 4.18425 4.39311 4.41973 4.59149 4.63083 4.78748 4.88550 5.07889 5.26983 5.60137 5.88404 6.01997 6.44925 6.72251 7.13671 8.07471 8.38642 8.57356 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.056222 B = 0.009641 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.907872 B = 2903.495254 C = 3378.424472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.553 5.553 3 C 0.522 3.478 4 O -0.585 6.585 5 C -0.552 4.552 6 H 0.110 0.890 7 C 0.025 3.975 8 N -0.806 5.806 9 Si 1.009 2.991 10 H -0.234 1.234 11 H -0.270 1.270 12 H -0.270 1.270 13 C 0.411 3.589 14 N -0.366 5.366 15 N -0.352 5.352 16 C 0.150 3.850 17 N -0.500 5.500 18 C 0.059 3.941 19 H 0.071 0.929 20 H 0.092 0.908 21 H 0.094 0.906 22 H 0.279 0.721 23 H 0.275 0.725 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 -9.007 0.817 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.289 5.289 3 C 0.331 3.669 4 O -0.466 6.466 5 C -0.587 4.587 6 H 0.127 0.873 7 C -0.192 4.192 8 N -0.435 5.435 9 Si 0.827 3.173 10 H -0.156 1.156 11 H -0.195 1.195 12 H -0.195 1.195 13 C 0.055 3.945 14 N -0.212 5.212 15 N -0.189 5.189 16 C -0.139 4.139 17 N -0.200 5.200 18 C -0.081 4.081 19 H 0.090 0.910 20 H 0.110 0.890 21 H 0.112 0.888 22 H 0.089 0.911 23 H 0.290 0.710 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.790 -8.494 0.668 15.369 hybrid contribution -1.079 0.312 0.127 1.130 sum -13.869 -8.182 0.795 16.122 Atomic orbital electron populations 1.22402 0.76388 1.05218 1.02970 1.45531 1.08342 1.00596 1.74469 1.17807 0.87498 0.82872 0.78691 1.90760 1.15692 1.85351 1.54809 1.20646 0.95975 0.89077 1.53026 0.87261 1.27232 0.95462 1.05620 0.90921 1.70224 1.10184 1.29609 1.33443 0.84814 0.79742 0.74313 0.78467 1.15639 1.19472 1.19481 1.21961 0.89232 0.82928 1.00412 1.75120 1.09604 1.09745 1.26707 1.74049 1.26995 0.97982 1.19924 1.27204 0.81688 0.99885 1.05142 1.46567 1.11245 1.03662 1.58569 1.22755 0.74862 1.05397 1.05103 0.91048 0.88999 0.88789 0.91069 0.70974 0.88500 0.88648 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.21 8.50 127.77 1.09 3.30 15 2 N -0.55 -26.42 3.05 -674.94 -2.06 -28.48 15 3 C 0.52 31.40 7.41 85.06 0.63 32.03 15 4 O -0.58 -42.07 13.60 -4.65 -0.06 -42.13 15 5 C -0.55 -30.12 8.58 23.56 0.20 -29.92 15 6 H 0.11 4.99 5.82 -2.91 -0.02 4.97 15 7 C 0.03 1.38 5.50 85.34 0.47 1.85 15 8 N -0.81 -49.66 11.73 21.85 0.26 -49.40 15 9 Si 1.01 38.82 29.56 68.60 2.03 40.85 15 10 H -0.23 -7.88 7.11 99.48 0.71 -7.17 15 11 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 12 H -0.27 -10.13 7.11 99.48 0.71 -9.43 15 13 C 0.41 19.48 8.24 260.11 2.14 21.62 15 14 N -0.37 -20.76 10.47 -58.00 -0.61 -21.37 15 15 N -0.35 -16.49 12.19 -59.35 -0.72 -17.22 15 16 C 0.15 4.74 12.79 179.78 2.30 7.03 15 17 N -0.50 -15.90 3.20 -553.00 -1.77 -17.68 15 18 C 0.06 0.94 9.35 127.77 1.19 2.14 15 19 H 0.07 1.87 7.62 -2.38 -0.02 1.85 15 20 H 0.09 2.86 5.94 -2.39 -0.01 2.85 15 21 H 0.09 2.11 5.29 -2.39 -0.01 2.10 15 22 H 0.28 15.45 8.29 -92.71 -0.77 14.68 15 23 H 0.27 4.52 8.06 -2.91 -0.02 4.50 15 24 H 0.10 1.17 7.69 -2.39 -0.02 1.16 15 25 H 0.10 1.48 5.61 -2.38 -0.01 1.47 15 26 H 0.13 1.01 8.14 -2.39 -0.02 0.99 15 Total: -1.00 -95.13 227.95 6.30 -88.83 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.22 Total: 8.55 kcal Atomic # 6 Polarization: 30.03 SS G_CDS: 8.02 Total: 38.05 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -4.91 Total: -134.15 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.06 Total: -42.13 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -95.13 6.30 -88.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306216600.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.304 kcal (2) G-P(sol) polarization free energy of solvation -95.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds