Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46892 * 2 1 4 4 N 1.46497 * 109.47347 * 240.00026 * 2 1 3 5 5 C 1.36939 * 120.00102 * 84.99863 * 4 2 1 6 6 H 1.08001 * 119.99624 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00286 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99835 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99960 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47129 * 90.00197 * 9 7 5 11 11 H 1.48504 * 109.47237 * 209.99821 * 9 7 5 12 12 H 1.48506 * 109.47567 * 329.99993 * 9 7 5 13 13 C 1.50699 * 109.47157 * 119.99775 * 2 1 3 14 14 C 1.38240 * 120.40199 * 80.20980 * 13 2 1 15 15 N 1.31852 * 120.81564 * 180.28660 * 14 13 2 16 16 C 1.31868 * 121.75035 * 359.73433 * 15 14 13 17 17 C 1.38420 * 120.72875 * 0.02765 * 16 15 14 18 18 F 1.35108 * 120.44328 * 179.97438 * 17 16 15 19 19 C 1.38587 * 120.40614 * 259.99965 * 13 2 1 20 20 H 1.09002 * 109.47174 * 59.99737 * 1 2 3 21 21 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47412 * 300.00069 * 1 2 3 23 23 H 0.96994 * 120.00044 * 265.00111 * 4 2 1 24 24 H 0.97003 * 120.00294 * 179.97438 * 8 7 5 25 25 H 1.07993 * 119.59105 * 0.02562 * 14 13 2 26 26 H 1.07998 * 119.63112 * 180.02562 * 16 15 14 27 27 H 1.08002 * 120.80390 * 0.02562 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6114 -0.6619 -3.5093 8 7 2.9235 -1.9391 -3.4504 9 14 2.7891 0.2698 -5.1185 10 1 4.1514 0.8549 -5.2039 11 1 2.5783 -0.6616 -6.2557 12 1 1.7790 1.3570 -5.1753 13 6 2.0324 -0.7104 1.2305 14 6 2.0744 -2.0915 1.2728 15 7 2.5071 -2.7214 2.3472 16 6 2.9195 -2.0681 3.4158 17 6 2.9111 -0.6842 3.4457 18 9 3.3344 -0.0206 4.5438 19 6 2.4619 0.0130 2.3318 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 2.2491 -1.6317 -1.1526 24 1 3.2462 -2.3966 -4.2426 25 1 1.7448 -2.6615 0.4168 26 1 3.2675 -2.6188 4.2772 27 1 2.4431 1.0929 2.3258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306235220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = -3.348218 kcal Electronic energy + Delta-G solvation = -13272.846663 eV Core-core repulsion = 10752.406627 eV Total energy + Delta-G solvation = -2520.440036 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.86006 -39.94148 -35.85572 -32.77984 -31.47872 -29.89415 -28.29204 -24.54226 -23.54734 -23.12452 -20.31121 -17.79473 -17.00562 -16.69841 -16.47526 -15.67457 -14.77183 -14.09421 -13.78208 -13.44242 -13.39308 -12.90297 -12.52325 -12.43582 -12.08249 -11.46193 -10.94248 -10.82724 -10.80414 -10.17653 -9.81470 -9.51735 -9.30903 -9.03995 -8.61901 -7.10543 -5.85517 -3.15898 1.13867 1.30341 3.39351 3.44518 3.46315 3.85603 4.15734 4.51944 4.63161 4.86193 4.96762 5.17094 5.42638 5.56745 5.67943 5.80510 5.95441 6.10779 6.20041 6.25031 6.49648 6.65616 6.86046 6.92729 7.61861 8.03636 8.31487 9.43228 9.95384 10.30483 11.36756 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049664 B = 0.007395 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.648044 B = 3785.454901 C = 3907.398721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.210 3.790 3 H 0.061 0.939 4 N -0.721 5.721 5 C -0.245 4.245 6 H 0.073 0.927 7 C -0.009 4.009 8 N -0.930 5.930 9 Si 0.909 3.091 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.281 1.281 13 C -0.087 4.087 14 C 0.103 3.897 15 N -0.457 5.457 16 C 0.056 3.944 17 C 0.041 3.959 18 F -0.137 7.137 19 C -0.111 4.111 20 H 0.062 0.938 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.385 0.615 24 H 0.257 0.743 25 H 0.167 0.833 26 H 0.161 0.839 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 2.661 11.490 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.100 3.900 3 H 0.079 0.921 4 N -0.363 5.363 5 C -0.376 4.376 6 H 0.091 0.909 7 C -0.206 4.206 8 N -0.577 5.577 9 Si 0.740 3.260 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.207 1.207 13 C -0.090 4.090 14 C -0.055 4.055 15 N -0.165 5.165 16 C -0.103 4.103 17 C 0.020 3.980 18 F -0.116 7.116 19 C -0.138 4.138 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.220 0.780 24 H 0.067 0.933 25 H 0.184 0.816 26 H 0.178 0.822 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.119 1.874 11.365 11.712 hybrid contribution 0.329 1.218 -0.705 1.445 sum -1.790 3.092 10.661 11.243 Atomic orbital electron populations 1.22447 0.97711 1.01484 1.00518 1.19189 0.92469 0.95060 0.83318 0.92078 1.42502 1.78332 1.10672 1.04828 1.19219 1.37354 0.94096 0.86931 0.90893 1.24760 1.01640 0.95979 0.98183 1.69652 1.50259 1.08639 1.29164 0.86168 0.77847 0.78607 0.83397 1.21640 1.21690 1.20652 1.21431 0.96163 0.95188 0.96230 1.22804 0.95063 0.91962 0.95648 1.67752 1.09015 1.40059 0.99631 1.22784 0.99832 0.89541 0.98098 1.18792 1.02525 0.91880 0.84808 1.91486 1.87815 1.80931 1.51377 1.21533 0.98847 1.01461 0.91940 0.91881 0.93059 0.94216 0.77962 0.93286 0.81588 0.82226 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.47 37.16 0.35 -2.38 15 2 C 0.21 3.97 3.11 -69.08 -0.21 3.75 15 3 H 0.06 1.14 7.97 -51.93 -0.41 0.73 15 4 N -0.72 -17.20 5.07 -54.55 -0.28 -17.47 15 5 C -0.25 -6.52 9.93 -15.06 -0.15 -6.67 15 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 15 7 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 15 8 N -0.93 -27.32 13.06 55.49 0.72 -26.59 15 9 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 15 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 13 C -0.09 -1.48 4.97 -104.49 -0.52 -2.00 15 14 C 0.10 1.80 10.23 -17.54 -0.18 1.62 15 15 N -0.46 -7.66 10.36 -13.20 -0.14 -7.79 15 16 C 0.06 0.81 11.17 -17.47 -0.20 0.61 15 17 C 0.04 0.60 7.35 -39.28 -0.29 0.31 15 18 F -0.14 -1.89 17.28 2.25 0.04 -1.85 15 19 C -0.11 -1.66 9.81 -39.22 -0.38 -2.04 15 20 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.04 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.39 9.69 6.08 -40.82 -0.25 9.44 15 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 25 H 0.17 2.99 6.91 -52.49 -0.36 2.62 15 26 H 0.16 1.82 8.06 -52.49 -0.42 1.39 15 27 H 0.14 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 245.82 15.07 3.70 3.70 Total: -1.00 -29.01 245.82 -5.33 -34.34 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -2.68 Total: 6.06 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.68 Total: -7.15 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.31 Total: -51.86 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.01 -5.33 -34.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306235220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.994 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds