Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36871 * 120.00103 * 2 1 4 4 H 1.08001 * 120.00162 * 214.96965 * 3 2 1 5 5 C 1.39045 * 120.00131 * 34.96834 * 3 2 1 6 6 N 1.31368 * 119.99874 * 5.19329 * 5 3 2 7 7 Si 1.86799 * 120.00231 * 185.19744 * 5 3 2 8 8 H 1.48501 * 109.46966 * 59.99504 * 7 5 3 9 9 H 1.48494 * 109.47192 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46824 * 299.99995 * 7 5 3 11 11 C 1.34771 * 119.99855 * 179.97438 * 2 1 3 12 12 O 1.21595 * 120.00076 * 5.47152 * 11 2 1 13 13 C 1.47746 * 120.00257 * 185.19605 * 11 2 1 14 14 N 1.34592 * 126.05376 * 355.16616 * 13 11 2 15 15 C 1.30864 * 107.26742 * 180.02562 * 14 13 11 16 16 N 1.34592 * 107.64311 * 359.97438 * 15 14 13 17 17 C 1.46501 * 125.74406 * 180.02562 * 16 15 14 18 18 N 1.28855 * 108.51248 * 359.73211 * 16 15 14 19 19 H 1.09000 * 109.46921 * 265.00691 * 1 2 3 20 20 H 1.09004 * 109.46723 * 24.99852 * 1 2 3 21 21 H 1.08992 * 109.47096 * 145.00133 * 1 2 3 22 22 H 0.97002 * 119.99674 * 180.02562 * 6 5 3 23 23 H 1.08003 * 126.17939 * 180.02562 * 15 14 13 24 24 H 1.08998 * 109.46763 * 90.00674 * 17 16 15 25 25 H 1.09002 * 109.46737 * 210.00111 * 17 16 15 26 26 H 1.08994 * 109.47185 * 330.00410 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.0832 1.2698 -0.5361 5 6 1.6425 2.2808 0.6901 6 7 0.5615 2.1512 1.4252 7 14 2.4985 3.9369 0.5720 8 1 2.5195 4.3833 -0.8442 9 1 1.7659 4.9326 1.3947 10 1 3.8912 3.8110 1.0719 11 6 2.1389 -1.1672 0.0005 12 8 1.5350 -2.2179 -0.0994 13 6 3.6118 -1.1698 0.1164 14 7 4.4068 -0.0840 0.1358 15 6 5.6399 -0.5074 0.2490 16 7 5.6065 -1.8519 0.2999 17 6 6.7703 -2.7327 0.4264 18 7 4.3781 -2.2338 0.2249 19 1 -0.3633 -0.0894 1.0238 20 1 -0.3633 0.9314 -0.4343 21 1 -0.3633 -0.8418 -0.5894 22 1 0.2077 2.9155 1.9064 23 1 6.5245 0.1106 0.2942 24 1 6.9784 -2.9104 1.4815 25 1 6.5630 -3.6818 -0.0679 26 1 7.6352 -2.2613 -0.0402 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306262678.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = 79.583266 kcal Electronic energy + Delta-G solvation = -13822.094325 eV Core-core repulsion = 11325.170430 eV Total energy + Delta-G solvation = -2496.923896 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.63686 -38.08796 -34.66146 -33.91507 -31.35276 -30.96243 -27.85273 -26.00804 -24.66061 -22.43085 -21.33048 -19.21640 -17.80178 -16.23859 -16.10610 -15.53436 -14.72541 -14.29941 -13.85769 -13.72308 -13.10671 -12.87814 -12.58343 -11.55947 -11.38380 -11.18066 -11.06100 -10.77081 -10.45237 -10.29365 -9.69229 -9.34726 -8.92937 -8.78978 -8.61158 -7.47650 -6.23796 -3.85703 2.17707 2.79406 2.99743 3.29139 3.30693 3.34109 4.19027 4.47034 4.55029 4.77261 4.98744 5.08537 5.26509 5.32447 5.54406 6.06713 6.72366 6.89360 7.02061 7.07232 7.16375 7.36567 7.72705 7.95190 8.62437 8.80022 9.21900 9.58137 9.96645 10.81164 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.033016 B = 0.012281 C = 0.009239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.882617 B = 2279.388171 C = 3029.884790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.414 5.414 3 C -0.315 4.315 4 H 0.122 0.878 5 C 0.036 3.964 6 N -0.877 5.877 7 Si 0.928 3.072 8 H -0.274 1.274 9 H -0.287 1.287 10 H -0.271 1.271 11 C 0.535 3.465 12 O -0.596 6.596 13 C 0.190 3.810 14 N -0.447 5.447 15 C 0.157 3.843 16 N -0.321 5.321 17 C 0.093 3.907 18 N -0.286 5.286 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.037 0.963 22 H 0.268 0.732 23 H 0.214 0.786 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -1.990 -1.337 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.131 5.131 3 C -0.444 4.444 4 H 0.139 0.861 5 C -0.168 4.168 6 N -0.515 5.515 7 Si 0.755 3.245 8 H -0.199 1.199 9 H -0.213 1.213 10 H -0.196 1.196 11 C 0.321 3.679 12 O -0.481 6.481 13 C -0.090 4.090 14 N -0.171 5.171 15 C -0.139 4.139 16 N -0.117 5.117 17 C -0.049 4.049 18 N -0.124 5.124 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.230 0.770 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.597 -2.682 -1.278 11.005 hybrid contribution 0.927 1.078 0.264 1.446 sum 11.524 -1.603 -1.015 11.679 Atomic orbital electron populations 1.21348 0.80004 0.99700 1.01006 1.43333 1.05673 1.04483 1.59660 1.20277 1.07329 0.86398 1.30435 0.86073 1.25547 0.96268 1.00478 0.94546 1.69951 1.21640 1.31557 1.28377 0.85978 0.79479 0.80839 0.78207 1.19928 1.21308 1.19577 1.16489 0.82286 0.84427 0.84698 1.90640 1.67996 1.31640 1.57805 1.24017 0.97035 0.83850 1.04078 1.71941 0.98689 1.28782 1.17728 1.26758 0.99384 0.83363 1.04367 1.47341 1.05822 1.07292 1.51265 1.22005 0.84152 0.94966 1.03796 1.74333 0.89730 1.26619 1.21713 0.92710 0.91376 0.94457 0.92204 0.76998 0.90085 0.88933 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.16 8.71 59.85 0.52 3.68 15 2 N -0.41 -11.54 2.97 -123.31 -0.37 -11.91 15 3 C -0.32 -8.62 8.10 -15.00 -0.12 -8.74 15 4 H 0.12 3.26 5.67 -52.49 -0.30 2.97 15 5 C 0.04 0.97 5.18 -17.45 -0.09 0.88 15 6 N -0.88 -24.15 11.15 55.50 0.62 -23.53 15 7 Si 0.93 20.64 29.56 -169.99 -5.02 15.61 15 8 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 11 C 0.54 15.02 7.64 -12.38 -0.09 14.93 15 12 O -0.60 -17.69 16.72 5.28 0.09 -17.60 15 13 C 0.19 4.75 7.69 -156.31 -1.20 3.55 15 14 N -0.45 -10.09 8.09 -12.38 -0.10 -10.19 15 15 C 0.16 2.60 12.62 -90.48 -1.14 1.45 15 16 N -0.32 -5.26 3.72 -69.39 -0.26 -5.52 15 17 C 0.09 0.85 11.38 59.85 0.68 1.53 15 18 N -0.29 -6.34 12.09 32.06 0.39 -5.95 15 19 H 0.05 1.46 7.73 -51.93 -0.40 1.05 15 20 H 0.07 1.72 7.29 -51.93 -0.38 1.34 15 21 H 0.04 0.91 7.50 -51.93 -0.39 0.52 15 22 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 23 H 0.21 2.27 8.06 -52.48 -0.42 1.84 15 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 15 LS Contribution 235.90 15.07 3.55 3.55 Total: -1.00 -35.39 235.90 -4.84 -40.23 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -2.29 Total: -1.97 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: -1.45 Total: 17.27 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.09 Total: -17.60 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -35.39 -4.84 -40.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306262678.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.816 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds