Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86808 * 119.99638 * 2 1 4 4 H 1.48495 * 109.46974 * 269.99680 * 3 2 1 5 5 H 1.48492 * 109.47216 * 29.99829 * 3 2 1 6 6 H 1.48498 * 109.46752 * 149.99944 * 3 2 1 7 7 C 1.40008 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.41453 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.40410 * 119.79260 * 179.97438 * 9 7 2 11 11 C 1.39026 * 118.87706 * 179.97438 * 10 9 7 12 12 N 1.39250 * 120.78139 * 179.97438 * 11 10 9 13 13 C 1.46499 * 119.99914 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 11 15 15 F 1.39898 * 109.46890 * 179.97438 * 14 13 12 16 16 C 1.39711 * 118.43643 * 0.24821 * 11 10 9 17 17 C 1.38457 * 119.46643 * 359.50405 * 16 11 10 18 18 N 1.31528 * 121.11182 * 0.51249 * 17 16 11 19 19 H 0.96997 * 120.00027 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.56155 * 359.95371 * 10 9 7 21 21 H 0.97000 * 119.99666 * 359.97438 * 12 11 10 22 22 H 1.09002 * 109.47391 * 59.99710 * 13 12 11 23 23 H 1.09001 * 109.46813 * 299.99767 * 13 12 11 24 24 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 25 25 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 26 26 H 1.07999 * 120.26370 * 179.71992 * 16 11 10 27 27 H 1.07998 * 119.43912 * 180.25249 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6179 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4403 0.7001 7 6 2.0076 -1.2125 0.0005 8 1 3.0877 -1.2124 0.0001 9 6 1.3004 -2.4375 0.0005 10 6 2.0068 -3.6509 0.0005 11 6 1.2925 -4.8437 0.0011 12 7 1.9527 -6.0697 0.0006 13 6 1.1829 -7.3161 0.0006 14 6 2.1423 -8.5080 0.0006 15 9 1.4072 -9.6983 0.0012 16 6 -0.1033 -4.7832 -0.0037 17 6 -0.7316 -3.5494 0.0016 18 7 -0.0366 -2.4328 0.0010 19 1 -0.4850 0.8400 -0.0004 20 1 3.0867 -3.6576 -0.0002 21 1 2.9223 -6.0984 -0.0006 22 1 0.5544 -7.3551 -0.8891 23 1 0.5552 -7.3554 0.8908 24 1 2.7704 -8.4689 -0.8894 25 1 2.7704 -8.4688 0.8905 26 1 -0.6874 -5.6916 -0.0080 27 1 -1.8106 -3.5032 0.0020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306364877.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = -22.129851 kcal Electronic energy + Delta-G solvation = -12993.079924 eV Core-core repulsion = 10471.825455 eV Total energy + Delta-G solvation = -2521.254469 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.73501 -38.31713 -35.69279 -33.34593 -30.73072 -29.82587 -27.26191 -25.65205 -22.95438 -21.48589 -20.50752 -17.68698 -16.37022 -16.23471 -15.84166 -15.32958 -14.55779 -14.28060 -13.97241 -13.64923 -13.11911 -12.86596 -12.20063 -12.10167 -11.30899 -11.25986 -11.01641 -10.98721 -10.65602 -10.38872 -9.78527 -9.76687 -9.12997 -7.58244 -7.47189 -6.75918 -6.32953 -4.48344 2.82909 3.11510 3.14373 3.18662 3.33875 3.85047 3.99679 4.64988 4.72638 4.83453 4.90215 5.36572 5.78644 5.95082 6.04603 6.13784 6.44384 6.67669 6.90787 7.09467 7.17888 7.46656 7.61264 7.67292 8.26605 8.35455 8.41106 8.77942 9.03072 10.24365 10.40559 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.077716 B = 0.006246 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.199886 B = 4481.814398 C = 4821.568346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.081 0.919 9 C 0.281 3.719 10 C -0.344 4.344 11 C 0.253 3.747 12 N -0.755 5.755 13 C 0.104 3.896 14 C 0.054 3.946 15 F -0.214 7.214 16 C -0.371 4.371 17 C 0.150 3.850 18 N -0.506 5.506 19 H 0.271 0.729 20 H 0.095 0.905 21 H 0.391 0.609 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -8.248 0.001 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.155 4.155 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.099 0.901 9 C 0.157 3.843 10 C -0.370 4.370 11 C 0.148 3.852 12 N -0.390 5.390 13 C -0.022 4.022 14 C -0.001 4.001 15 F -0.195 7.195 16 C -0.399 4.399 17 C -0.017 4.017 18 N -0.220 5.220 19 H 0.083 0.917 20 H 0.113 0.887 21 H 0.224 0.776 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.557 -7.415 0.006 7.844 hybrid contribution 1.134 -0.294 -0.009 1.172 sum 3.692 -7.709 -0.003 8.548 Atomic orbital electron populations 1.70160 1.07128 1.27550 1.28824 1.26070 0.94877 1.00968 0.93574 0.86366 0.80457 0.81020 0.79159 1.19464 1.20159 1.18629 1.19581 0.94109 0.89411 1.43477 0.90082 1.18344 0.88154 0.91222 0.86562 1.21158 0.98034 0.91798 1.26052 1.17607 0.91648 0.84001 0.91910 1.44063 1.07114 1.02230 1.85600 1.21577 0.94519 0.83625 1.02430 1.22071 0.93705 0.80506 1.03851 1.92762 1.79944 1.48573 1.98219 1.20868 0.92279 0.98288 1.28485 1.22309 0.98563 0.88372 0.92446 1.68764 1.07204 1.26478 1.19537 0.91747 0.88688 0.77590 0.91847 0.91852 0.90403 0.90407 0.88997 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.42 11.46 55.55 0.64 -18.79 15 2 C 0.07 1.82 5.50 -17.35 -0.10 1.73 15 3 Si 0.91 18.81 29.56 -169.99 -5.02 13.79 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.43 -11.87 9.14 -37.70 -0.34 -12.22 15 8 H 0.08 2.07 7.85 -52.49 -0.41 1.66 15 9 C 0.28 7.88 6.55 -85.01 -0.56 7.32 15 10 C -0.34 -8.55 9.72 -38.47 -0.37 -8.93 15 11 C 0.25 5.66 6.69 -83.65 -0.56 5.10 15 12 N -0.76 -12.93 5.72 -58.50 -0.33 -13.27 15 13 C 0.10 1.49 5.40 -4.04 -0.02 1.47 15 14 C 0.05 0.59 7.67 37.16 0.28 0.88 15 15 F -0.21 -2.73 17.36 2.25 0.04 -2.70 15 16 C -0.37 -8.49 9.40 -38.95 -0.37 -8.86 15 17 C 0.15 3.74 11.17 -17.60 -0.20 3.54 15 18 N -0.51 -14.30 7.86 -11.21 -0.09 -14.38 15 19 H 0.27 6.65 8.29 -40.82 -0.34 6.32 15 20 H 0.09 2.20 8.06 -52.49 -0.42 1.77 15 21 H 0.39 5.79 8.50 -40.82 -0.35 5.44 15 22 H 0.06 0.94 7.98 -51.93 -0.41 0.53 15 23 H 0.06 0.94 8.00 -51.93 -0.42 0.53 15 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.09 1.88 6.87 -52.49 -0.36 1.52 15 27 H 0.12 2.58 8.06 -52.49 -0.42 2.16 15 LS Contribution 244.40 15.07 3.68 3.68 Total: -1.00 -30.26 244.40 -6.09 -36.35 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -2.77 Total: 5.28 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.23 Total: -9.97 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.21 Total: -46.44 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.26 -6.09 -36.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364877.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.222 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds