Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86808 * 119.99638 * 2 1 4 4 H 1.48495 * 109.46974 * 269.99680 * 3 2 1 5 5 H 1.48492 * 109.47216 * 29.99829 * 3 2 1 6 6 H 1.48498 * 109.46752 * 149.99944 * 3 2 1 7 7 C 1.40008 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.41453 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.40410 * 119.79260 * 179.97438 * 9 7 2 11 11 C 1.39026 * 118.87706 * 179.97438 * 10 9 7 12 12 N 1.39250 * 120.78139 * 179.97438 * 11 10 9 13 13 C 1.46499 * 119.99914 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 11 15 15 F 1.39898 * 109.46890 * 179.97438 * 14 13 12 16 16 C 1.39711 * 118.43643 * 0.24821 * 11 10 9 17 17 C 1.38457 * 119.46643 * 359.50405 * 16 11 10 18 18 N 1.31528 * 121.11182 * 0.51249 * 17 16 11 19 19 H 0.96997 * 120.00027 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.56155 * 359.95371 * 10 9 7 21 21 H 0.97000 * 119.99666 * 359.97438 * 12 11 10 22 22 H 1.09002 * 109.47391 * 59.99710 * 13 12 11 23 23 H 1.09001 * 109.46813 * 299.99767 * 13 12 11 24 24 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 25 25 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 26 26 H 1.07999 * 120.26370 * 179.71992 * 16 11 10 27 27 H 1.07998 * 119.43912 * 180.25249 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6179 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4403 0.7001 7 6 2.0076 -1.2125 0.0005 8 1 3.0877 -1.2124 0.0001 9 6 1.3004 -2.4375 0.0005 10 6 2.0068 -3.6509 0.0005 11 6 1.2925 -4.8437 0.0011 12 7 1.9527 -6.0697 0.0006 13 6 1.1829 -7.3161 0.0006 14 6 2.1423 -8.5080 0.0006 15 9 1.4072 -9.6983 0.0012 16 6 -0.1033 -4.7832 -0.0037 17 6 -0.7316 -3.5494 0.0016 18 7 -0.0366 -2.4328 0.0010 19 1 -0.4850 0.8400 -0.0004 20 1 3.0867 -3.6576 -0.0002 21 1 2.9223 -6.0984 -0.0006 22 1 0.5544 -7.3551 -0.8891 23 1 0.5552 -7.3554 0.8908 24 1 2.7704 -8.4689 -0.8894 25 1 2.7704 -8.4688 0.8905 26 1 -0.6874 -5.6916 -0.0080 27 1 -1.8106 -3.5032 0.0020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306364877.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = -41.962548 kcal Electronic energy + Delta-G solvation = -12993.939934 eV Core-core repulsion = 10471.825455 eV Total energy + Delta-G solvation = -2522.114479 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.68125 -40.14587 -37.26032 -35.22724 -32.27438 -31.71852 -28.78063 -27.53925 -24.27000 -23.28001 -22.25762 -19.48609 -17.70365 -17.36810 -17.31176 -16.80425 -16.17026 -15.90110 -15.52015 -14.92990 -14.67893 -14.52241 -14.03062 -13.89565 -12.96670 -12.86031 -12.59749 -12.22125 -12.08376 -11.99448 -11.61205 -11.36961 -10.95570 -9.54230 -9.42437 -8.42548 -8.23646 -6.49867 0.96769 1.38129 1.42225 1.56147 1.60043 2.25201 2.49565 2.91050 3.61196 3.86306 4.04666 4.06667 4.27775 4.36235 4.67470 4.71434 4.80887 4.89342 5.06926 5.22510 5.39103 5.67077 5.71553 5.83751 6.30227 6.55882 6.80577 6.96104 7.09124 8.31731 8.51554 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.077716 B = 0.006246 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.199886 B = 4481.814398 C = 4821.568346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.473 4.473 8 H 0.086 0.914 9 C 0.249 3.751 10 C -0.364 4.364 11 C 0.261 3.739 12 N -0.741 5.741 13 C 0.100 3.900 14 C 0.063 3.937 15 F -0.222 7.222 16 C -0.368 4.368 17 C 0.131 3.869 18 N -0.546 5.546 19 H 0.278 0.722 20 H 0.105 0.895 21 H 0.404 0.596 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 -9.147 0.004 10.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.124 3.876 10 C -0.391 4.391 11 C 0.153 3.847 12 N -0.375 5.375 13 C -0.025 4.025 14 C 0.008 3.992 15 F -0.204 7.204 16 C -0.396 4.396 17 C -0.034 4.034 18 N -0.262 5.262 19 H 0.088 0.912 20 H 0.123 0.877 21 H 0.240 0.760 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.137 0.863 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.600 -8.382 0.009 9.122 hybrid contribution 0.769 -0.219 -0.011 0.799 sum 4.369 -8.600 -0.003 9.646 Atomic orbital electron populations 1.70265 1.08908 1.28924 1.29824 1.27024 0.95736 1.04585 0.92441 0.85138 0.78967 0.75687 0.79425 1.18724 1.19273 1.17893 1.19961 0.94624 0.90504 1.45305 0.89556 1.18804 0.88678 0.92768 0.87340 1.21268 0.98650 0.92076 1.27137 1.17645 0.91676 0.85311 0.90104 1.44030 1.08027 1.01498 1.83903 1.21729 0.95199 0.83514 1.02051 1.22061 0.92740 0.78434 1.05996 1.92751 1.80330 1.48948 1.98350 1.21123 0.92889 0.98544 1.27064 1.22740 0.99610 0.88702 0.92396 1.68708 1.07793 1.28242 1.21411 0.91179 0.87682 0.76017 0.92219 0.92228 0.88314 0.88325 0.86343 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.16 11.46 21.83 0.25 -41.91 15 2 C 0.02 1.23 5.50 85.28 0.47 1.70 15 3 Si 0.99 38.88 29.56 68.60 2.03 40.90 15 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 15 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 7 C -0.47 -26.47 9.14 23.49 0.21 -26.26 15 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 15 9 C 0.25 14.26 6.55 40.18 0.26 14.52 15 10 C -0.36 -18.21 9.72 22.99 0.22 -17.98 15 11 C 0.26 11.36 6.69 38.51 0.26 11.61 15 12 N -0.74 -23.48 5.72 -338.99 -1.94 -25.42 15 13 C 0.10 2.57 5.40 86.38 0.47 3.03 15 14 C 0.06 1.15 7.67 71.98 0.55 1.70 15 15 F -0.22 -5.03 17.36 44.97 0.78 -4.25 15 16 C -0.37 -16.45 9.40 22.68 0.21 -16.24 15 17 C 0.13 6.56 11.17 84.79 0.95 7.51 15 18 N -0.55 -31.68 7.86 -189.37 -1.49 -33.17 15 19 H 0.28 13.92 8.29 -92.71 -0.77 13.15 15 20 H 0.11 4.85 8.06 -2.91 -0.02 4.83 15 21 H 0.40 10.78 8.50 -92.71 -0.79 9.99 15 22 H 0.06 1.61 7.98 -2.39 -0.02 1.59 15 23 H 0.06 1.61 8.00 -2.39 -0.02 1.59 15 24 H 0.10 1.46 8.14 -2.39 -0.02 1.44 15 25 H 0.10 1.46 8.14 -2.39 -0.02 1.44 15 26 H 0.12 4.57 6.87 -2.91 -0.02 4.55 15 27 H 0.14 6.00 8.06 -2.91 -0.02 5.97 15 Total: -1.00 -66.37 244.40 3.63 -62.73 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.40 Total: 21.51 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.61 Total: -20.40 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -3.18 Total: -100.50 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.78 Total: -4.25 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.90 kcal Total: -66.37 3.63 -62.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364877.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.769 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds