Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47561 * 2 1 4 4 N 1.28511 * 124.43925 * 90.02549 * 3 2 1 5 5 C 1.31120 * 109.07627 * 180.02562 * 4 3 2 6 6 C 1.40985 * 105.77039 * 359.97438 * 5 4 3 7 7 C 1.47703 * 127.24408 * 180.02562 * 6 5 4 8 8 O 1.21593 * 120.00252 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99737 * 179.72894 * 7 6 5 10 10 C 1.36922 * 119.99977 * 180.27687 * 9 7 6 11 11 H 1.07991 * 119.99784 * 0.02562 * 10 9 7 12 12 C 1.39020 * 119.99560 * 179.97438 * 10 9 7 13 13 N 1.31374 * 120.00491 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99552 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47257 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99948 * 14 12 10 17 17 H 1.48498 * 109.47018 * 239.99994 * 14 12 10 18 18 N 1.28593 * 124.43639 * 270.33481 * 3 2 1 19 19 H 1.09005 * 109.47079 * 60.00099 * 1 2 3 20 20 H 1.09000 * 109.47482 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46836 * 300.00759 * 1 2 3 22 22 H 1.08997 * 109.47122 * 239.99545 * 2 1 3 23 23 H 1.09005 * 109.47079 * 119.99901 * 2 1 3 24 24 H 1.08001 * 127.11804 * 180.02562 * 5 4 3 25 25 H 0.97000 * 119.99736 * 0.27188 * 9 7 6 26 26 H 0.96996 * 120.00310 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2611 2.0662 1.0599 5 6 2.6820 3.2584 0.7125 6 6 2.6850 3.2680 -0.6973 7 6 3.0789 4.3826 -1.5829 8 8 3.4521 5.4363 -1.1046 9 7 3.0302 4.2295 -2.9210 10 6 3.4007 5.2608 -3.7419 11 1 3.7323 6.1967 -3.3172 12 6 3.3510 5.1027 -5.1222 13 7 2.9491 3.9637 -5.6390 14 14 3.8572 6.5095 -6.2422 15 1 4.2687 7.6746 -5.4185 16 1 4.9952 6.0794 -7.0937 17 1 2.7107 6.8926 -7.1047 18 7 2.2550 2.0688 -1.0606 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.9681 4.0658 1.3702 25 1 2.7328 3.3887 -3.3025 26 1 2.9141 3.8535 -6.6020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307009664.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = 41.065453 kcal Electronic energy + Delta-G solvation = -13290.600828 eV Core-core repulsion = 10792.006674 eV Total energy + Delta-G solvation = -2498.594153 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.55468 -39.96679 -36.15159 -35.68063 -33.85231 -33.08626 -31.28279 -27.59537 -25.63243 -24.46206 -22.35764 -21.26178 -20.12375 -18.43499 -17.89911 -17.52743 -16.72234 -15.95006 -15.77277 -15.36866 -15.08881 -14.73167 -13.66610 -13.62311 -13.08262 -12.95437 -12.87918 -12.45428 -12.31384 -12.07960 -11.95334 -11.63007 -11.38284 -10.77637 -10.37020 -10.12269 -8.55357 -6.02813 0.39507 0.97140 1.35032 1.43951 1.45119 1.59710 2.26973 2.37078 2.85272 3.22729 3.23245 3.95059 3.97251 4.07754 4.25447 4.36849 4.69515 4.73386 4.76989 5.07140 5.16224 5.35018 5.69916 5.88460 6.44402 6.97589 7.14985 7.41849 7.92303 8.62131 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049157 B = 0.007610 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.470338 B = 3678.370988 C = 4160.568808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.139 5.139 4 N -0.291 5.291 5 C 0.017 3.983 6 C -0.043 4.043 7 C 0.510 3.490 8 O -0.620 6.620 9 N -0.540 5.540 10 C -0.339 4.339 11 H 0.092 0.908 12 C -0.009 4.009 13 N -0.911 5.911 14 Si 1.005 2.995 15 H -0.267 1.267 16 H -0.268 1.268 17 H -0.268 1.268 18 N -0.275 5.275 19 H 0.047 0.953 20 H 0.121 0.879 21 H 0.059 0.941 22 H 0.123 0.877 23 H 0.138 0.862 24 H 0.220 0.780 25 H 0.399 0.601 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -9.564 7.235 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.001 3.999 3 N -0.044 5.044 4 N -0.132 5.132 5 C -0.165 4.165 6 C -0.204 4.204 7 C 0.296 3.704 8 O -0.507 6.507 9 N -0.174 5.174 10 C -0.468 4.468 11 H 0.110 0.890 12 C -0.211 4.211 13 N -0.550 5.550 14 Si 0.827 3.173 15 H -0.191 1.191 16 H -0.193 1.193 17 H -0.193 1.193 18 N -0.124 5.124 19 H 0.067 0.933 20 H 0.140 0.860 21 H 0.078 0.922 22 H 0.141 0.859 23 H 0.155 0.845 24 H 0.237 0.763 25 H 0.234 0.766 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.225 -10.253 7.335 13.296 hybrid contribution 0.345 1.059 -0.772 1.355 sum -3.881 -9.193 6.563 11.944 Atomic orbital electron populations 1.22172 0.92053 1.05612 1.02382 1.22611 0.96992 0.72328 1.07943 1.48809 1.42822 1.14302 0.98492 1.73844 1.18117 1.05286 1.15924 1.24993 1.02438 0.95918 0.93186 1.23127 1.08389 0.93330 0.95571 1.16729 0.85443 0.86202 0.82030 1.90575 1.55549 1.28987 1.75566 1.41850 1.55481 1.15796 1.04240 1.19949 1.43258 0.95324 0.88315 0.88988 1.26303 0.95919 1.00678 0.98186 1.69701 1.45270 1.25756 1.14267 0.84710 0.78336 0.77054 0.77236 1.19105 1.19284 1.19277 1.74428 1.16592 1.04916 1.16461 0.93336 0.86038 0.92163 0.85905 0.84456 0.76347 0.76621 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 71.98 0.74 -1.91 15 2 C 0.12 2.22 7.24 86.38 0.63 2.85 15 3 N -0.14 -4.40 3.94 -187.51 -0.74 -5.14 15 4 N -0.29 -9.57 12.00 -56.13 -0.67 -10.24 15 5 C 0.02 0.63 12.04 85.47 1.03 1.66 15 6 C -0.04 -1.89 7.21 42.22 0.30 -1.58 15 7 C 0.51 27.25 7.78 86.74 0.67 27.92 15 8 O -0.62 -36.11 16.53 -4.01 -0.07 -36.18 15 9 N -0.54 -30.14 5.28 -309.74 -1.63 -31.78 15 10 C -0.34 -19.68 9.68 84.09 0.81 -18.87 15 11 H 0.09 5.55 7.15 -2.91 -0.02 5.53 15 12 C -0.01 -0.50 5.50 84.95 0.47 -0.03 15 13 N -0.91 -49.88 13.05 21.68 0.28 -49.60 15 14 Si 1.00 42.34 29.55 68.60 2.03 44.37 15 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 18 N -0.28 -10.95 11.84 -48.18 -0.57 -11.52 15 19 H 0.05 1.00 8.14 -2.38 -0.02 0.99 15 20 H 0.12 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 15 22 H 0.12 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.14 1.76 8.14 -2.38 -0.02 1.74 15 24 H 0.22 6.98 8.06 -2.91 -0.02 6.96 15 25 H 0.40 21.95 7.66 -92.71 -0.71 21.24 15 26 H 0.28 14.23 8.31 -92.71 -0.77 13.46 15 Total: -1.00 -70.45 245.09 3.78 -66.67 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.50 Total: 23.37 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 4.65 Total: 10.04 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -3.34 Total: -108.28 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.07 Total: -36.18 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.45 3.78 -66.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307009664.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.739 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds