Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 O 1.42894 * 109.47449 * 64.99499 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38265 * 119.98271 * 279.72428 * 13 10 9 15 15 C 1.38221 * 120.04968 * 179.72873 * 14 13 10 16 16 C 1.38221 * 120.02506 * 0.54784 * 15 14 13 17 17 C 1.38444 * 119.97395 * 359.72460 * 16 15 14 18 18 F 1.35094 * 120.02523 * 180.02562 * 17 16 15 19 19 C 1.38177 * 119.98887 * 99.99755 * 13 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 0.96703 * 113.99928 * 59.99800 * 12 10 9 24 24 H 1.08000 * 119.97656 * 359.97411 * 14 13 10 25 25 H 1.08000 * 119.98871 * 180.27522 * 15 14 13 26 26 H 1.07998 * 120.01707 * 179.70755 * 16 15 14 27 27 H 1.08002 * 120.00980 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 8 2.9874 -3.6597 1.2106 13 6 1.4956 -4.9631 -0.1402 14 6 0.8987 -5.5304 0.9705 15 6 0.2062 -6.7207 0.8520 16 6 0.1193 -7.3512 -0.3750 17 6 0.7214 -6.7870 -1.4867 18 9 0.6367 -7.4020 -2.6865 19 6 1.4101 -5.5915 -1.3679 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.4413 -3.7546 2.0030 24 1 0.9702 -5.0410 1.9306 25 1 -0.2635 -7.1607 1.7193 26 1 -0.4178 -8.2836 -0.4665 27 1 1.8806 -5.1506 -2.2343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307293009.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -85.552168 kcal Electronic energy + Delta-G solvation = -13200.305782 eV Core-core repulsion = 10644.008363 eV Total energy + Delta-G solvation = -2556.297418 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -48.71847 -39.16829 -36.28912 -32.91661 -31.47354 -30.17852 -28.83402 -24.98354 -22.56044 -22.28720 -20.44675 -17.63445 -16.40581 -16.07686 -15.95250 -15.41654 -15.32567 -14.48561 -14.18655 -13.60845 -13.26321 -12.77290 -12.51977 -12.01984 -11.67412 -11.32335 -11.16358 -10.82870 -10.60035 -10.47493 -10.17743 -9.21001 -9.13137 -8.64320 -8.43218 -8.33939 -6.05153 -4.07188 1.37722 1.43191 3.29929 3.37654 3.43244 3.80818 4.39544 4.45105 4.89721 5.01574 5.19122 5.27269 5.33880 5.44915 5.60641 6.02228 6.02985 6.25053 6.33176 6.48090 6.57326 6.80918 7.10138 7.45664 7.55314 7.92002 8.28385 8.39736 8.99562 9.56987 11.06125 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048476 B = 0.007197 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.461683 B = 3889.445152 C = 4032.612570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.001 3.999 10 C 0.143 3.857 11 H 0.099 0.901 12 O -0.553 6.553 13 C -0.064 4.064 14 C -0.125 4.125 15 C -0.090 4.090 16 C -0.169 4.169 17 C 0.095 3.905 18 F -0.145 7.145 19 C -0.149 4.149 20 H 0.260 0.740 21 H 0.022 0.978 22 H 0.027 0.973 23 H 0.365 0.635 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -12.002 0.845 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.080 0.920 9 C -0.036 4.036 10 C 0.084 3.916 11 H 0.117 0.883 12 O -0.357 6.357 13 C -0.065 4.065 14 C -0.143 4.143 15 C -0.109 4.109 16 C -0.188 4.188 17 C 0.076 3.924 18 F -0.124 7.124 19 C -0.168 4.168 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.045 0.955 23 H 0.212 0.788 24 H 0.145 0.855 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.707 -11.835 0.379 11.862 hybrid contribution -0.290 0.749 0.055 0.805 sum 0.417 -11.086 0.434 11.102 Atomic orbital electron populations 1.69979 1.06089 1.26638 1.50927 1.25024 0.94848 0.99380 0.95283 0.86485 0.80217 0.83502 0.77527 1.19593 1.21063 1.21030 1.21180 0.93377 0.90206 1.50339 0.91965 1.19764 0.93899 0.91614 0.98332 1.21220 0.93724 0.89388 0.87300 0.88348 1.86544 1.37442 1.96301 1.15454 1.20975 0.96045 0.97054 0.92406 1.20997 0.98282 0.95981 0.99010 1.20927 0.98099 0.95145 0.96679 1.21016 1.03452 1.01915 0.92401 1.17694 1.00775 0.93203 0.80750 1.91465 1.94806 1.82438 1.43690 1.21016 1.01941 0.94624 0.99187 0.93005 0.95933 0.95475 0.78815 0.85474 0.85309 0.85300 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.79 15 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 15 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.51 -14.22 8.88 -34.44 -0.31 -14.53 15 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 15 9 C 0.00 0.02 4.63 -27.88 -0.13 -0.10 15 10 C 0.14 2.88 3.15 -27.88 -0.09 2.79 15 11 H 0.10 2.01 8.00 -51.92 -0.42 1.59 15 12 O -0.55 -10.91 12.94 -35.23 -0.46 -11.37 15 13 C -0.06 -1.12 4.97 -104.63 -0.52 -1.64 15 14 C -0.12 -1.89 9.32 -39.58 -0.37 -2.26 15 15 C -0.09 -1.18 10.04 -39.59 -0.40 -1.58 15 16 C -0.17 -2.28 10.03 -39.51 -0.40 -2.68 15 17 C 0.09 1.47 7.30 -39.42 -0.29 1.18 15 18 F -0.15 -2.23 17.27 2.25 0.04 -2.19 15 19 C -0.15 -2.47 9.65 -39.52 -0.38 -2.85 15 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.37 5.99 7.49 45.56 0.34 6.33 15 24 H 0.13 1.71 6.77 -52.49 -0.36 1.36 15 25 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 26 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.13 2.10 8.04 -52.49 -0.42 1.68 15 LS Contribution 246.55 15.07 3.72 3.72 Total: -1.00 -30.54 246.55 -6.04 -36.58 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -2.08 Total: 2.69 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.97 Total: -20.19 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.46 Total: -11.37 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.54 -6.04 -36.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307293009.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.970 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds