Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 O 1.42894 * 109.47449 * 64.99499 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38265 * 119.98271 * 279.72428 * 13 10 9 15 15 C 1.38221 * 120.04968 * 179.72873 * 14 13 10 16 16 C 1.38221 * 120.02506 * 0.54784 * 15 14 13 17 17 C 1.38444 * 119.97395 * 359.72460 * 16 15 14 18 18 F 1.35094 * 120.02523 * 180.02562 * 17 16 15 19 19 C 1.38177 * 119.98887 * 99.99755 * 13 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 0.96703 * 113.99928 * 59.99800 * 12 10 9 24 24 H 1.08000 * 119.97656 * 359.97411 * 14 13 10 25 25 H 1.08000 * 119.98871 * 180.27522 * 15 14 13 26 26 H 1.07998 * 120.01707 * 179.70755 * 16 15 14 27 27 H 1.08002 * 120.00980 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 8 2.9874 -3.6597 1.2106 13 6 1.4956 -4.9631 -0.1402 14 6 0.8987 -5.5304 0.9705 15 6 0.2062 -6.7207 0.8520 16 6 0.1193 -7.3512 -0.3750 17 6 0.7214 -6.7870 -1.4867 18 9 0.6367 -7.4020 -2.6865 19 6 1.4101 -5.5915 -1.3679 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.4413 -3.7546 2.0030 24 1 0.9702 -5.0410 1.9306 25 1 -0.2635 -7.1607 1.7193 26 1 -0.4178 -8.2836 -0.4665 27 1 1.8806 -5.1506 -2.2343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307293009.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = -105.361347 kcal Electronic energy + Delta-G solvation = -13201.164772 eV Core-core repulsion = 10644.008363 eV Total energy + Delta-G solvation = -2557.156409 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.90685 -40.45713 -37.79359 -35.00021 -32.87608 -31.40342 -30.59474 -26.77495 -23.98500 -23.72480 -21.95270 -19.10795 -18.20042 -17.42366 -17.16215 -16.98923 -16.59265 -16.29965 -15.67210 -15.08404 -14.60518 -14.39376 -14.05353 -13.44208 -13.18673 -12.85340 -12.72786 -12.60040 -12.45698 -12.22779 -11.87123 -11.23883 -10.73930 -10.60177 -9.88459 -9.60821 -8.21377 -6.30992 0.19054 0.25892 1.39750 1.40933 1.54371 2.40619 2.62831 3.11815 3.21753 3.69445 3.76813 3.86140 4.13332 4.26248 4.39485 4.53220 4.74652 4.88696 5.09407 5.14538 5.31216 5.37464 5.43035 5.68708 5.76550 5.94712 6.19621 6.81916 6.92572 7.37636 8.90148 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048476 B = 0.007197 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.461683 B = 3889.445152 C = 4032.612570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.009 3.991 10 C 0.157 3.843 11 H 0.089 0.911 12 O -0.561 6.561 13 C -0.088 4.088 14 C -0.131 4.131 15 C -0.081 4.081 16 C -0.157 4.157 17 C 0.081 3.919 18 F -0.147 7.147 19 C -0.165 4.165 20 H 0.264 0.736 21 H 0.008 0.992 22 H 0.000 1.000 23 H 0.379 0.621 24 H 0.141 0.859 25 H 0.170 0.830 26 H 0.162 0.838 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -12.946 1.704 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.028 4.028 10 C 0.098 3.902 11 H 0.107 0.893 12 O -0.367 6.367 13 C -0.088 4.088 14 C -0.149 4.149 15 C -0.098 4.098 16 C -0.176 4.176 17 C 0.062 3.938 18 F -0.126 7.126 19 C -0.184 4.184 20 H 0.072 0.928 21 H 0.026 0.974 22 H 0.018 0.982 23 H 0.228 0.772 24 H 0.159 0.841 25 H 0.188 0.812 26 H 0.179 0.821 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.649 -12.792 1.244 12.868 hybrid contribution -0.305 0.969 -0.195 1.034 sum 0.344 -11.823 1.049 11.874 Atomic orbital electron populations 1.70090 1.07615 1.27706 1.51842 1.25891 0.95705 1.03095 0.94824 0.85427 0.79016 0.78999 0.77779 1.18966 1.20476 1.20260 1.21535 0.93398 0.91807 1.50119 0.92444 1.19607 0.94168 0.92880 0.96175 1.20773 0.92528 0.89531 0.87333 0.89332 1.86496 1.37954 1.96340 1.15949 1.20678 0.97832 0.96482 0.93825 1.21284 0.97946 0.96868 0.98786 1.21361 0.96702 0.93872 0.97902 1.21450 1.01953 1.02606 0.91581 1.17849 1.01372 0.93092 0.81468 1.91458 1.94861 1.82322 1.43958 1.21071 1.02756 0.95571 0.98963 0.92760 0.97409 0.98188 0.77191 0.84112 0.81249 0.82062 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 15 2 C 0.00 0.15 5.46 84.66 0.46 0.61 15 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 15 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 7 C -0.53 -29.94 8.88 25.60 0.23 -29.71 15 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 15 9 C 0.01 0.46 4.63 29.85 0.14 0.59 15 10 C 0.16 6.49 3.15 29.85 0.09 6.58 15 11 H 0.09 3.75 8.00 -2.38 -0.02 3.73 15 12 O -0.56 -22.04 12.94 -148.98 -1.93 -23.97 15 13 C -0.09 -3.05 4.97 -19.87 -0.10 -3.15 15 14 C -0.13 -3.73 9.32 22.27 0.21 -3.52 15 15 C -0.08 -1.83 10.04 22.26 0.22 -1.60 15 16 C -0.16 -3.74 10.03 22.31 0.22 -3.51 15 17 C 0.08 2.40 7.30 22.38 0.16 2.56 15 18 F -0.15 -4.36 17.27 44.97 0.78 -3.58 15 19 C -0.16 -5.48 9.65 22.31 0.22 -5.27 15 20 H 0.26 14.84 8.31 -92.70 -0.77 14.07 15 21 H 0.01 0.40 8.14 -2.38 -0.02 0.38 15 22 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 15 23 H 0.38 12.20 7.49 -74.06 -0.56 11.65 15 24 H 0.14 3.52 6.77 -2.91 -0.02 3.50 15 25 H 0.17 2.47 8.06 -2.91 -0.02 2.45 15 26 H 0.16 2.78 8.06 -2.91 -0.02 2.76 15 27 H 0.13 4.26 8.04 -2.91 -0.02 4.24 15 Total: -1.00 -65.51 246.55 3.64 -61.87 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.62 Total: 11.26 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 1.86 Total: -36.41 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.93 Total: -23.97 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -65.51 3.64 -61.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307293009.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.489 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds