Wall clock time and date at job start Mon Mar 30 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47106 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47098 * 120.00058 * 3 2 1 6 6 H 1.48506 * 109.47095 * 240.00078 * 3 2 1 7 7 C 1.40018 * 119.99733 * 179.72624 * 2 1 3 8 8 H 1.08007 * 120.00237 * 356.31919 * 7 2 1 9 9 C 1.41313 * 120.00090 * 176.31954 * 7 2 1 10 10 C 1.40589 * 119.78714 * 186.43736 * 9 7 2 11 11 C 1.38354 * 119.14885 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.67757 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49467 * 0.02562 * 12 11 10 14 14 N 1.38823 * 119.58251 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00417 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47403 * 179.97438 * 15 14 13 17 17 F 1.39899 * 109.47205 * 179.97438 * 16 15 14 18 18 N 1.31976 * 120.83264 * 359.72501 * 13 12 11 19 19 H 0.96995 * 120.00445 * 175.19866 * 1 2 3 20 20 H 1.08000 * 120.42414 * 359.97296 * 10 9 7 21 21 H 1.07998 * 120.66057 * 180.02562 * 11 10 9 22 22 H 1.07999 * 120.25051 * 179.97438 * 12 11 10 23 23 H 0.97000 * 119.99931 * 180.02562 * 14 13 12 24 24 H 1.09002 * 109.46975 * 300.00205 * 15 14 13 25 25 H 1.09001 * 109.47095 * 59.99453 * 15 14 13 26 26 H 1.09002 * 109.47413 * 300.00170 * 16 15 14 27 27 H 1.09001 * 109.47251 * 59.99781 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0952 1.6964 1.2124 6 1 3.0952 1.6964 -1.2126 7 6 2.0075 -1.2126 0.0058 8 1 1.4691 -2.1467 0.0703 9 6 3.4185 -1.2143 -0.0728 10 6 4.1092 -2.4319 -0.2034 11 6 5.4906 -2.4182 -0.2786 12 6 6.1479 -1.1989 -0.2228 13 6 5.4052 -0.0222 -0.0924 14 7 6.0616 1.1998 -0.0358 15 6 7.5237 1.2503 -0.1132 16 6 7.9889 2.7054 -0.0289 17 9 9.3852 2.7535 -0.1023 18 7 4.0876 -0.0577 -0.0273 19 1 -0.4850 -0.8370 -0.0703 20 1 3.5684 -3.3659 -0.2436 21 1 6.0458 -3.3391 -0.3796 22 1 7.2257 -1.1587 -0.2788 23 1 5.5521 2.0202 0.0550 24 1 7.9511 0.6832 0.7138 25 1 7.8526 0.8182 -1.0583 26 1 7.5615 3.2721 -0.8561 27 1 7.6600 3.1378 0.9160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307421262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:15 Heat of formation + Delta-G solvation = -55.326233 kcal Electronic energy + Delta-G solvation = -13313.483835 eV Core-core repulsion = 10790.789863 eV Total energy + Delta-G solvation = -2522.693972 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.65738 -40.61637 -37.24911 -35.49320 -33.03347 -32.05493 -29.21165 -27.21646 -24.19562 -23.61706 -22.09171 -20.32458 -18.44185 -17.46295 -17.31152 -16.75510 -16.23998 -15.99154 -15.50183 -15.30235 -15.03912 -14.38873 -14.23498 -14.10911 -13.61418 -12.69734 -12.47640 -12.23374 -12.03384 -11.95520 -11.59228 -11.38827 -10.79202 -10.32431 -9.67694 -9.22219 -8.63492 -6.80606 0.77720 0.99443 1.58067 1.74498 2.02277 2.28595 2.49062 2.70313 3.58067 3.63368 3.89694 4.07788 4.15753 4.39095 4.51049 4.71042 4.72644 4.78595 4.80835 5.01758 5.39214 5.45851 5.67210 5.81395 5.95851 6.13037 6.53755 6.55679 6.85140 7.68801 7.97143 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.035670 B = 0.010101 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.780006 B = 2771.241773 C = 3534.344181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.013 3.987 3 Si 1.201 2.799 4 H -0.337 1.337 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.272 3.728 10 C -0.329 4.329 11 C -0.008 4.008 12 C -0.348 4.348 13 C 0.423 3.577 14 N -0.734 5.734 15 C 0.104 3.896 16 C 0.059 3.941 17 F -0.219 7.219 18 N -0.640 5.640 19 H 0.279 0.721 20 H 0.104 0.896 21 H 0.143 0.857 22 H 0.137 0.863 23 H 0.400 0.600 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.020 4.254 -0.321 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.203 4.203 3 Si 1.035 2.965 4 H -0.271 1.271 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.147 3.853 10 C -0.352 4.352 11 C -0.032 4.032 12 C -0.373 4.373 13 C 0.186 3.814 14 N -0.370 5.370 15 C -0.020 4.020 16 C 0.004 3.996 17 F -0.200 7.200 18 N -0.370 5.370 19 H 0.090 0.910 20 H 0.122 0.878 21 H 0.161 0.839 22 H 0.155 0.845 23 H 0.235 0.765 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.507 6.422 -0.198 14.957 hybrid contribution -0.209 -2.723 -0.083 2.732 sum 13.297 3.699 -0.281 13.805 Atomic orbital electron populations 1.70675 1.08535 1.32525 1.33994 1.28624 0.95573 1.08141 0.87913 0.81134 0.69388 0.67306 0.78634 1.27122 1.21708 1.21927 1.20752 0.91579 0.95802 1.46571 0.91798 1.18396 0.93135 0.87520 0.86250 1.21553 0.95392 0.97324 1.20903 1.21182 0.93111 0.97906 0.90995 1.20986 0.99904 0.91280 1.25143 1.18432 0.87759 0.86849 0.88345 1.44115 1.05818 1.05069 1.81987 1.21849 0.79104 0.97952 1.03143 1.22058 0.75389 0.96256 1.05908 1.92759 1.31683 1.97419 1.98169 1.65672 1.08173 1.28969 1.34153 0.90994 0.87765 0.83899 0.84485 0.76509 0.90805 0.90859 0.88494 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.60 13.65 21.84 0.30 -47.30 15 2 C 0.01 0.75 5.52 85.29 0.47 1.22 15 3 Si 1.20 58.59 25.45 68.60 1.75 60.33 15 4 H -0.34 -16.12 7.11 99.48 0.71 -15.41 15 5 H -0.29 -13.75 6.97 99.48 0.69 -13.06 15 6 H -0.29 -13.94 6.91 99.48 0.69 -13.25 15 7 C -0.51 -29.51 9.57 23.46 0.22 -29.29 15 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 15 9 C 0.27 14.51 6.42 40.19 0.26 14.76 15 10 C -0.33 -15.48 9.83 22.87 0.22 -15.25 15 11 C -0.01 -0.31 10.15 22.39 0.23 -0.09 15 12 C -0.35 -13.15 9.34 22.73 0.21 -12.94 15 13 C 0.42 17.71 7.65 133.40 1.02 18.73 15 14 N -0.73 -23.58 5.72 -345.00 -1.97 -25.56 15 15 C 0.10 2.39 5.34 86.38 0.46 2.85 15 16 C 0.06 1.03 7.67 71.98 0.55 1.58 15 17 F -0.22 -4.56 17.36 44.97 0.78 -3.78 15 18 N -0.64 -31.95 4.55 -186.59 -0.85 -32.80 15 19 H 0.28 15.46 8.72 -92.71 -0.81 14.66 15 20 H 0.10 4.72 8.06 -2.91 -0.02 4.69 15 21 H 0.14 4.38 8.06 -2.91 -0.02 4.36 15 22 H 0.14 4.20 6.68 -2.91 -0.02 4.18 15 23 H 0.40 12.27 8.59 -92.71 -0.80 11.48 15 24 H 0.07 1.65 7.92 -2.39 -0.02 1.63 15 25 H 0.07 1.65 7.92 -2.39 -0.02 1.63 15 26 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 Total: -1.00 -64.06 239.50 3.97 -60.09 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.32 Total: 7.43 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 3.65 Total: -18.42 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -2.53 Total: -105.65 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.78 Total: -3.78 kcal Atomic # 14 Polarization: 58.59 SS G_CDS: 1.75 Total: 60.33 kcal Total: -64.06 3.97 -60.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307421262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.766 kcal (2) G-P(sol) polarization free energy of solvation -64.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds