Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34818 * 116.99727 * 89.99694 * 12 2 1 14 14 O 1.21547 * 120.00293 * 0.02562 * 13 12 2 15 15 C 1.47007 * 119.99619 * 179.97438 * 13 12 2 16 16 C 1.38490 * 126.89030 * 180.02562 * 15 13 12 17 17 C 1.39645 * 105.35402 * 180.02562 * 16 15 13 18 18 N 1.30882 * 107.87997 * 0.02562 * 17 16 15 19 19 N 1.28449 * 110.94177 * 359.71266 * 18 17 16 20 20 H 0.97003 * 125.19606 * 180.31361 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.07996 * 127.32606 * 0.04319 * 16 15 13 26 26 H 1.07994 * 126.06320 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 8 2.0140 -0.6844 -1.1856 13 6 2.2179 0.0674 -2.2859 14 8 1.9977 1.2624 -2.2549 15 6 2.7078 -0.5579 -3.5229 16 6 2.9657 0.0738 -4.7281 17 6 3.4069 -0.9348 -5.5873 18 7 3.4008 -2.0613 -4.9210 19 7 3.0044 -1.8782 -3.7130 20 1 2.9256 -2.5715 -3.0392 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 2.8505 1.1233 -4.9551 26 1 3.7010 -0.8078 -6.6186 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308144568.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -20.146361 kcal Electronic energy + Delta-G solvation = -13409.942527 eV Core-core repulsion = 10876.401279 eV Total energy + Delta-G solvation = -2533.541248 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.37934 -39.34009 -35.86326 -33.38311 -31.63526 -30.91775 -29.52100 -25.42406 -24.11436 -21.94301 -21.12494 -20.19244 -18.42991 -16.71560 -16.15341 -15.71638 -15.36281 -14.62257 -14.60105 -13.82336 -13.43580 -12.96469 -12.35196 -12.05053 -11.34083 -11.16775 -10.96744 -10.89091 -10.46392 -10.36342 -9.98138 -9.70043 -9.41289 -9.07375 -9.01268 -8.58259 -6.26845 -4.34564 1.33279 2.63819 2.92434 3.18636 3.24815 3.28961 3.40608 3.45738 4.26153 4.76066 5.06583 5.16051 5.39719 5.64976 5.95050 6.46282 6.51941 6.77871 6.79992 6.96416 7.04663 7.47601 7.61189 7.79290 8.00116 8.02274 8.43791 8.74680 9.31220 10.80643 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.056429 B = 0.007466 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.082345 B = 3749.330138 C = 4047.575734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.050 0.950 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.357 6.357 13 C 0.525 3.475 14 O -0.499 6.499 15 C -0.006 4.006 16 C -0.162 4.162 17 C -0.007 4.007 18 N -0.275 5.275 19 N -0.363 5.363 20 H 0.453 0.547 21 H 0.102 0.898 22 H 0.037 0.963 23 H 0.017 0.983 24 H 0.267 0.733 25 H 0.166 0.834 26 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -3.452 -10.180 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.740 3.260 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.206 1.206 12 O -0.273 6.273 13 C 0.366 3.634 14 O -0.387 6.387 15 C -0.134 4.134 16 C -0.190 4.190 17 C -0.184 4.184 18 N -0.109 5.109 19 N -0.080 5.080 20 H 0.299 0.701 21 H 0.120 0.880 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.183 0.817 26 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.713 -4.069 -10.053 11.179 hybrid contribution -0.037 0.266 1.282 1.310 sum 2.676 -3.803 -8.771 9.927 Atomic orbital electron populations 1.22186 0.97286 1.00266 1.01656 1.20752 0.91548 0.94065 0.77112 0.93209 1.21028 1.32777 1.13639 0.88744 0.91225 1.24889 0.94830 0.95075 0.99108 1.69899 1.35866 1.22438 1.24261 0.86193 0.78647 0.79469 0.81674 1.19484 1.20666 1.20650 1.86551 1.76050 1.43457 1.21277 1.19677 0.75308 0.85185 0.83225 1.90841 1.48373 1.15354 1.84100 1.21129 1.10491 0.85866 0.95891 1.22200 1.04569 1.01385 0.90893 1.23597 1.05462 0.88183 1.01118 1.73166 1.17750 1.27347 0.92647 1.43791 1.46366 1.08149 1.09731 0.70086 0.88004 0.94338 0.96341 0.92303 0.81690 0.79467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.33 37.16 0.35 -3.52 15 2 C 0.22 5.69 2.56 -27.89 -0.07 5.62 15 3 H 0.05 1.44 7.16 -51.93 -0.37 1.06 15 4 C -0.52 -14.32 8.90 -34.44 -0.31 -14.63 15 5 H 0.07 1.87 7.81 -52.49 -0.41 1.46 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -24.69 11.32 55.43 0.63 -24.06 15 8 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 15 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 12 O -0.36 -8.18 9.88 -40.81 -0.40 -8.59 15 13 C 0.52 11.00 7.92 34.28 0.27 11.27 15 14 O -0.50 -11.70 16.18 -19.30 -0.31 -12.01 15 15 C -0.01 -0.10 7.21 -82.07 -0.59 -0.70 15 16 C -0.16 -2.30 10.85 -38.96 -0.42 -2.72 15 17 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 15 18 N -0.27 -3.83 12.14 30.58 0.37 -3.46 15 19 N -0.36 -5.29 6.94 33.47 0.23 -5.06 15 20 H 0.45 5.73 8.96 -190.45 -1.71 4.02 15 21 H 0.10 2.69 6.07 -51.93 -0.32 2.38 15 22 H 0.04 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 15 24 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.17 2.07 8.06 -52.49 -0.42 1.65 15 26 H 0.19 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 242.13 15.07 3.65 3.65 Total: -1.00 -30.28 242.13 -5.57 -35.85 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.63 Total: 1.43 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.08 Total: -3.36 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 1.23 Total: -32.59 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.72 Total: -20.60 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.28 -5.57 -35.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144568.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.701 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds