Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34818 * 116.99727 * 89.99694 * 12 2 1 14 14 O 1.21547 * 120.00293 * 0.02562 * 13 12 2 15 15 C 1.47007 * 119.99619 * 179.97438 * 13 12 2 16 16 C 1.38490 * 126.89030 * 180.02562 * 15 13 12 17 17 C 1.39645 * 105.35402 * 180.02562 * 16 15 13 18 18 N 1.30882 * 107.87997 * 0.02562 * 17 16 15 19 19 N 1.28449 * 110.94177 * 359.71266 * 18 17 16 20 20 H 0.97003 * 125.19606 * 180.31361 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.07996 * 127.32606 * 0.04319 * 16 15 13 26 26 H 1.07994 * 126.06320 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 8 2.0140 -0.6844 -1.1856 13 6 2.2179 0.0674 -2.2859 14 8 1.9977 1.2624 -2.2549 15 6 2.7078 -0.5579 -3.5229 16 6 2.9657 0.0738 -4.7281 17 6 3.4069 -0.9348 -5.5873 18 7 3.4008 -2.0613 -4.9210 19 7 3.0044 -1.8782 -3.7130 20 1 2.9256 -2.5715 -3.0392 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 2.8505 1.1233 -4.9551 26 1 3.7010 -0.8078 -6.6186 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308144568.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -40.153621 kcal Electronic energy + Delta-G solvation = -13410.810107 eV Core-core repulsion = 10876.401279 eV Total energy + Delta-G solvation = -2534.408828 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.53015 -41.09401 -37.70010 -35.39623 -32.78256 -32.31677 -31.37284 -27.50070 -25.66563 -23.25778 -22.59499 -21.69466 -20.02318 -18.67755 -17.91709 -17.20409 -16.87678 -16.36825 -16.05957 -15.15295 -14.76574 -14.40372 -14.28034 -13.97145 -13.26978 -13.06525 -12.85314 -12.43979 -12.22023 -12.12419 -11.70482 -11.59014 -11.05172 -10.64560 -10.50138 -10.27767 -8.32009 -6.49181 -0.02656 1.40960 1.42061 1.53787 1.55843 1.63866 1.91518 1.98231 2.38375 2.99403 3.67743 3.78855 4.20115 4.40133 4.50560 4.74717 4.76984 4.90636 5.06504 5.42719 5.44073 5.56051 5.81539 5.92349 5.97149 6.52360 6.74158 6.94078 7.22042 8.76043 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.056429 B = 0.007466 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.082345 B = 3749.330138 C = 4047.575734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.219 3.781 3 H 0.013 0.987 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.984 3.016 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.272 1.272 12 O -0.359 6.359 13 C 0.524 3.476 14 O -0.532 6.532 15 C -0.039 4.039 16 C -0.149 4.149 17 C 0.007 3.993 18 N -0.275 5.275 19 N -0.361 5.361 20 H 0.458 0.542 21 H 0.083 0.917 22 H 0.047 0.953 23 H 0.025 0.975 24 H 0.272 0.728 25 H 0.180 0.820 26 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -4.534 -11.122 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.166 3.834 3 H 0.031 0.969 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.197 1.197 12 O -0.275 6.275 13 C 0.368 3.632 14 O -0.422 6.422 15 C -0.165 4.165 16 C -0.177 4.177 17 C -0.169 4.169 18 N -0.109 5.109 19 N -0.079 5.079 20 H 0.305 0.695 21 H 0.102 0.898 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.198 0.802 26 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.448 -5.165 -11.013 12.644 hybrid contribution -0.235 0.629 1.429 1.579 sum 3.213 -4.537 -9.584 11.080 Atomic orbital electron populations 1.22015 0.96483 1.00621 1.01079 1.20471 0.92190 0.92328 0.78413 0.96917 1.21300 1.33603 1.14050 0.89713 0.91218 1.25818 0.94648 0.95642 1.02112 1.70012 1.36433 1.23548 1.25306 0.85113 0.78320 0.78390 0.77443 1.18708 1.20189 1.19697 1.86529 1.76390 1.43298 1.21282 1.20266 0.74359 0.84936 0.83603 1.90813 1.50035 1.16696 1.84630 1.20790 1.13564 0.87326 0.94869 1.22585 1.02648 1.02547 0.89950 1.24319 1.03546 0.86534 1.02485 1.73209 1.17281 1.28161 0.92282 1.43817 1.46428 1.07440 1.10220 0.69499 0.89799 0.93368 0.95607 0.91878 0.80230 0.74999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.30 9.33 71.98 0.67 -6.63 15 2 C 0.22 11.80 2.56 29.85 0.08 11.88 15 3 H 0.01 0.78 7.16 -2.39 -0.02 0.77 15 4 C -0.55 -30.44 8.90 25.60 0.23 -30.21 15 5 H 0.07 3.76 7.81 -2.91 -0.02 3.74 15 6 C 0.02 0.96 5.30 84.66 0.45 1.41 15 7 N -0.92 -51.60 11.32 21.45 0.24 -51.36 15 8 Si 0.98 42.00 29.54 68.60 2.03 44.02 15 9 H -0.26 -10.82 7.11 99.48 0.71 -10.12 15 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 12 O -0.36 -16.81 9.88 -57.30 -0.57 -17.38 15 13 C 0.52 22.36 7.92 70.12 0.56 22.92 15 14 O -0.53 -25.65 16.18 19.68 0.32 -25.33 15 15 C -0.04 -1.27 7.21 40.75 0.29 -0.98 15 16 C -0.15 -3.86 10.85 22.67 0.25 -3.62 15 17 C 0.01 0.14 12.03 85.17 1.02 1.17 15 18 N -0.27 -6.90 12.14 -57.15 -0.69 -7.60 15 19 N -0.36 -10.01 6.94 -48.03 -0.33 -10.34 15 20 H 0.46 11.23 8.96 -220.00 -1.97 9.26 15 21 H 0.08 4.55 6.07 -2.39 -0.01 4.54 15 22 H 0.05 2.27 8.14 -2.39 -0.02 2.26 15 23 H 0.02 1.20 8.14 -2.38 -0.02 1.18 15 24 H 0.27 14.27 8.31 -92.71 -0.77 13.50 15 25 H 0.18 4.07 8.06 -2.91 -0.02 4.05 15 26 H 0.23 2.54 8.06 -2.91 -0.02 2.52 15 Total: -1.00 -65.41 242.13 3.78 -61.64 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.76 Total: 10.40 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 3.54 Total: -4.06 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.78 Total: -69.30 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.25 Total: -42.71 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -65.41 3.78 -61.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144568.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.484 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds