Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86802 * 119.99715 * 2 1 4 4 H 1.48491 * 109.47185 * 269.99854 * 3 2 1 5 5 H 1.48497 * 109.47106 * 30.00034 * 3 2 1 6 6 H 1.48499 * 109.46782 * 149.99692 * 3 2 1 7 7 C 1.38752 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99638 * 0.02562 * 7 2 1 9 9 O 1.34917 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.34303 * 117.00215 * 180.02562 * 9 7 2 11 11 O 1.21217 * 119.99925 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00389 * 179.97438 * 10 9 7 13 13 H 1.09007 * 115.56017 * 61.87461 * 12 10 9 14 14 C 1.52994 * 117.50338 * 207.56677 * 12 10 9 15 15 C 1.52996 * 117.49882 * 276.19221 * 12 10 9 16 16 H 1.08997 * 117.50081 * 144.99755 * 15 12 10 17 17 C 1.53000 * 117.50055 * 359.97438 * 15 12 10 18 18 C 1.53776 * 113.61523 * 271.89541 * 17 15 12 19 19 C 1.53959 * 87.01800 * 220.04694 * 18 17 15 20 20 C 1.53779 * 113.61466 * 174.28301 * 17 15 12 21 21 H 0.96994 * 120.00168 * 359.97438 * 1 2 3 22 22 H 1.09003 * 117.49875 * 359.97438 * 14 12 10 23 23 H 1.08997 * 117.50411 * 214.97998 * 14 12 10 24 24 H 1.09000 * 112.84541 * 43.08672 * 17 15 12 25 25 H 1.08996 * 113.61320 * 334.56214 * 18 17 15 26 26 H 1.08999 * 113.61897 * 105.46873 * 18 17 15 27 27 H 1.09005 * 113.53549 * 270.81122 * 19 18 17 28 28 H 1.09001 * 113.74457 * 139.94631 * 19 18 17 29 29 H 1.09006 * 113.61450 * 254.52789 * 20 17 15 30 30 H 1.08995 * 113.61756 * 25.43800 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4402 0.7001 7 6 2.0083 -1.2016 0.0005 8 1 1.4682 -2.1369 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3982 0.0010 11 8 3.3071 -3.4148 0.0010 12 6 5.4722 -2.4771 0.0010 13 1 5.9661 -2.0388 0.8683 14 6 6.1148 -3.7154 -0.6270 15 6 6.1853 -2.3679 -1.3482 16 1 7.1482 -1.8576 -1.3687 17 6 5.3160 -2.1875 -2.5942 18 6 4.8549 -3.5139 -3.2210 19 6 5.1136 -2.8631 -4.5920 20 6 6.1246 -1.9487 -3.8802 21 1 -0.4850 0.8400 0.0004 22 1 5.4490 -4.4733 -1.0399 23 1 7.0314 -4.0919 -0.1731 24 1 4.5085 -1.4704 -2.4467 25 1 5.5165 -4.3526 -3.0040 26 1 3.8053 -3.7427 -3.0363 27 1 4.2499 -2.3315 -4.9915 28 1 5.5694 -3.5361 -5.3183 29 1 6.0985 -0.9156 -4.2270 30 1 7.1339 -2.3587 -3.8439 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308189383.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = -39.914010 kcal Electronic energy + Delta-G solvation = -14048.640881 eV Core-core repulsion = 11617.782787 eV Total energy + Delta-G solvation = -2430.858094 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.84497 -38.42866 -35.92455 -34.67335 -32.24687 -26.41015 -25.92447 -25.29636 -23.31149 -21.23718 -19.22799 -18.69571 -17.90318 -16.80434 -15.61105 -15.35072 -14.85338 -14.28048 -14.00710 -13.56325 -12.59294 -12.39620 -12.23055 -11.96477 -11.75351 -11.42042 -11.22526 -10.71340 -10.44502 -10.42429 -10.30483 -10.20897 -9.81435 -9.64239 -9.48200 -9.05649 -8.64150 -6.33343 -4.08519 3.14871 3.25952 3.36705 3.41682 3.91200 4.25145 4.29160 4.70956 4.91511 4.95126 5.07164 5.12712 5.17851 5.32803 5.48830 5.79077 5.85547 5.90309 5.94461 6.06878 6.08283 6.17148 6.35657 6.43949 6.50536 6.55128 6.78390 7.79251 8.08022 8.68128 9.05940 9.77004 10.75407 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.010478 C = 0.009599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.570271 B = 2671.592121 C = 2916.421236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.380 4.380 8 H 0.108 0.892 9 O -0.249 6.249 10 C 0.443 3.557 11 O -0.537 6.537 12 C -0.147 4.147 13 H 0.125 0.875 14 C -0.150 4.150 15 C -0.121 4.121 16 H 0.111 0.889 17 C -0.089 4.089 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.132 4.132 21 H 0.278 0.722 22 H 0.107 0.893 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.415 -2.221 -5.523 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.125 0.875 9 O -0.157 6.157 10 C 0.288 3.712 11 O -0.432 6.432 12 C -0.167 4.167 13 H 0.143 0.857 14 C -0.187 4.187 15 C -0.139 4.139 16 H 0.129 0.871 17 C -0.107 4.107 18 C -0.173 4.173 19 C -0.180 4.180 20 C -0.169 4.169 21 H 0.089 0.911 22 H 0.125 0.875 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.034 -2.343 -5.521 14.348 hybrid contribution 0.144 0.821 0.194 0.855 sum 13.178 -1.522 -5.327 14.295 Atomic orbital electron populations 1.69611 1.05679 1.28282 1.48077 1.24528 0.94975 0.98577 0.95688 0.86246 0.80362 0.81633 0.78927 1.19881 1.20837 1.18363 1.20640 0.76325 0.96849 1.51751 0.87458 1.83528 1.23695 1.31354 1.77171 1.21877 0.88887 0.82487 0.77924 1.90586 1.66611 1.36476 1.49478 1.21681 0.90577 1.05267 0.99127 0.85750 1.23132 1.01815 0.91428 1.02318 1.22375 0.99750 1.00466 0.91344 0.87133 1.22212 0.97969 0.98957 0.91531 1.23028 1.02133 0.96713 0.95406 1.22819 0.99498 0.99083 0.96628 1.22910 0.98039 0.99772 0.96176 0.91130 0.87456 0.88309 0.88137 0.89999 0.91096 0.90276 0.91826 0.91689 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 13.96 55.48 0.77 -25.56 16 2 C 0.07 1.91 5.49 -17.53 -0.10 1.81 16 3 Si 0.90 21.79 28.62 -169.99 -4.86 16.92 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.38 -11.48 10.10 30.92 0.31 -11.16 16 8 H 0.11 3.58 7.09 -52.49 -0.37 3.21 16 9 O -0.25 -6.73 8.57 -20.67 -0.18 -6.90 16 10 C 0.44 10.72 6.33 36.01 0.23 10.94 16 11 O -0.54 -14.57 15.85 -19.06 -0.30 -14.87 16 12 C -0.15 -2.63 6.29 -91.77 -0.58 -3.21 16 13 H 0.12 1.94 8.14 -51.93 -0.42 1.51 16 14 C -0.15 -2.20 9.01 -26.73 -0.24 -2.44 16 15 C -0.12 -1.80 5.84 -90.62 -0.53 -2.33 16 16 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.09 -1.41 3.28 -89.81 -0.29 -1.71 16 18 C -0.14 -2.07 6.64 -25.83 -0.17 -2.24 16 19 C -0.14 -1.86 8.09 -25.83 -0.21 -2.06 16 20 C -0.13 -1.67 7.65 -25.92 -0.20 -1.87 16 21 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.11 1.72 6.31 -51.93 -0.33 1.40 16 23 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.10 1.95 7.70 -51.93 -0.40 1.55 16 25 H 0.08 1.12 6.82 -51.93 -0.35 0.77 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -32.34 258.36 -6.42 -38.76 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.97 Total: 2.01 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.78 Total: -14.26 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.77 Total: -25.56 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.48 Total: -21.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.34 -6.42 -38.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189383.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.150 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds