Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47048 * 2 1 4 4 C 1.50702 * 109.47217 * 239.99513 * 2 1 3 5 5 O 1.21205 * 120.00452 * 239.99974 * 4 2 1 6 6 O 1.34315 * 119.99782 * 60.00069 * 4 2 1 7 7 C 1.34917 * 117.00002 * 179.97438 * 6 4 2 8 8 H 1.08003 * 119.99956 * 0.02562 * 7 6 4 9 9 C 1.38759 * 119.99902 * 180.02562 * 7 6 4 10 10 N 1.31436 * 120.00031 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99738 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47250 * 90.00290 * 11 9 7 13 13 H 1.48500 * 109.47156 * 209.99853 * 11 9 7 14 14 H 1.48501 * 109.47311 * 330.00254 * 11 9 7 15 15 N 1.46502 * 109.46890 * 120.00049 * 2 1 3 16 16 C 1.34942 * 126.03991 * 84.97526 * 15 2 1 17 17 C 1.35316 * 107.74613 * 179.75096 * 16 15 2 18 18 C 1.39870 * 107.92161 * 0.39436 * 17 16 15 19 19 N 1.30836 * 108.20019 * 359.59732 * 18 17 16 20 20 H 1.09000 * 109.46990 * 60.00338 * 1 2 3 21 21 H 1.08994 * 109.47048 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46797 * 300.00254 * 1 2 3 23 23 H 0.96999 * 119.99758 * 179.97438 * 10 9 7 24 24 H 1.08002 * 126.12737 * 359.97438 * 16 15 2 25 25 H 1.07998 * 126.04386 * 180.27449 * 17 16 15 26 26 H 1.08002 * 125.90382 * 179.86983 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7292 -1.6960 -1.1192 6 8 1.7079 -0.2517 -2.4503 7 6 2.1908 -0.9336 -3.5096 8 1 2.8078 -1.8063 -3.3543 9 6 1.8945 -0.5138 -4.7986 10 7 1.1440 0.5485 -4.9875 11 14 2.5624 -1.4584 -6.2651 12 1 1.5959 -2.5167 -6.6542 13 1 2.7620 -0.5272 -7.4046 14 1 3.8603 -2.0824 -5.9027 15 7 2.0183 -0.6906 1.1962 16 6 2.1928 -2.0222 1.3285 17 6 2.6614 -2.2547 2.5765 18 6 2.7686 -1.0239 3.2323 19 7 2.3866 -0.0853 2.4047 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.9372 0.8422 -5.8886 24 1 1.9973 -2.7682 0.5725 25 1 2.9071 -3.2202 2.9934 26 1 3.1119 -0.8738 4.2452 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388862673.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = -16.875433 kcal Electronic energy + Delta-G solvation = -13585.018912 eV Core-core repulsion = 11051.619502 eV Total energy + Delta-G solvation = -2533.399410 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.32486 -40.99301 -37.56997 -35.49694 -34.35996 -31.19002 -30.44522 -27.81633 -25.75366 -23.15700 -22.02446 -21.18202 -20.00195 -18.56246 -18.06547 -16.99637 -16.61127 -16.22646 -15.80979 -15.31779 -14.79866 -14.32879 -13.80229 -13.72708 -13.60640 -13.27842 -13.04653 -12.77979 -12.42363 -12.20368 -12.08538 -11.73698 -11.12461 -10.75945 -10.43870 -9.53958 -8.60982 -6.41563 0.89777 1.13108 1.24770 1.37533 1.50380 1.53447 1.98999 2.07914 2.50412 2.90832 3.68506 3.77359 3.97510 4.16441 4.31766 4.57788 4.64381 4.74195 4.89612 5.01546 5.09445 5.18199 5.72947 5.78941 5.99436 6.46006 6.76178 6.83266 7.56957 8.58474 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.063370 B = 0.007826 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.740438 B = 3576.826643 C = 3871.586717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.184 3.816 3 H 0.134 0.866 4 C 0.388 3.612 5 O -0.565 6.565 6 O -0.223 6.223 7 C -0.423 4.423 8 H 0.085 0.915 9 C 0.003 3.997 10 N -0.894 5.894 11 Si 1.018 2.982 12 H -0.258 1.258 13 H -0.260 1.260 14 H -0.265 1.265 15 N -0.376 5.376 16 C 0.071 3.929 17 C -0.288 4.288 18 C 0.052 3.948 19 N -0.330 5.330 20 H 0.090 0.910 21 H 0.062 0.938 22 H 0.095 0.905 23 H 0.282 0.718 24 H 0.165 0.835 25 H 0.173 0.827 26 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.670 -2.694 9.287 9.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.080 3.920 3 H 0.152 0.848 4 C 0.234 3.766 5 O -0.463 6.463 6 O -0.130 6.130 7 C -0.498 4.498 8 H 0.103 0.897 9 C -0.199 4.199 10 N -0.531 5.531 11 Si 0.836 3.164 12 H -0.183 1.183 13 H -0.184 1.184 14 H -0.189 1.189 15 N -0.159 5.159 16 C -0.074 4.074 17 C -0.316 4.316 18 C -0.134 4.134 19 N -0.151 5.151 20 H 0.108 0.892 21 H 0.081 0.919 22 H 0.114 0.886 23 H 0.091 0.909 24 H 0.182 0.818 25 H 0.191 0.809 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.829 -1.469 8.822 8.982 hybrid contribution 0.509 -1.225 -0.710 1.505 sum -0.319 -2.695 8.112 8.554 Atomic orbital electron populations 1.22058 0.88947 1.03821 1.05117 1.20349 0.97616 0.96663 0.77366 0.84809 1.23755 0.81274 0.84953 0.86642 1.90553 1.39847 1.28609 1.87295 1.83862 1.63860 1.52134 1.13141 1.21468 1.33675 1.11924 0.82768 0.89735 1.26520 0.95803 0.97241 1.00352 1.70052 1.34845 1.23769 1.24408 0.84620 0.78813 0.77749 0.75181 1.18271 1.18419 1.18913 1.48435 1.51884 1.05172 1.10386 1.22911 0.99063 0.86618 0.98857 1.21832 1.14723 1.00839 0.94254 1.24553 0.97880 0.90256 1.00734 1.77274 1.22888 1.23363 0.91557 0.89173 0.91919 0.88595 0.90897 0.81824 0.80929 0.75986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.45 71.98 0.68 -3.81 15 2 C 0.18 7.06 3.84 44.25 0.17 7.23 15 3 H 0.13 4.84 8.14 -2.39 -0.02 4.82 15 4 C 0.39 18.97 7.15 71.24 0.51 19.48 15 5 O -0.57 -29.79 12.94 20.79 0.27 -29.52 15 6 O -0.22 -12.56 9.65 14.86 0.14 -12.42 15 7 C -0.42 -24.70 9.65 67.94 0.66 -24.04 15 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 15 9 C 0.00 0.14 5.49 84.88 0.47 0.60 15 10 N -0.89 -50.72 13.67 21.63 0.30 -50.42 15 11 Si 1.02 41.86 29.55 68.60 2.03 43.89 15 12 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 13 H -0.26 -9.93 7.11 99.48 0.71 -9.23 15 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 15 N -0.38 -14.04 3.49 -331.06 -1.15 -15.20 15 16 C 0.07 2.55 9.68 83.54 0.81 3.36 15 17 C -0.29 -8.29 10.80 21.99 0.24 -8.05 15 18 C 0.05 1.42 12.03 85.24 1.03 2.44 15 19 N -0.33 -11.34 12.58 -57.02 -0.72 -12.06 15 20 H 0.09 2.95 8.11 -2.39 -0.02 2.93 15 21 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.28 14.45 8.31 -92.71 -0.77 13.68 15 24 H 0.16 6.18 6.73 -2.91 -0.02 6.16 15 25 H 0.17 3.80 8.06 -2.91 -0.02 3.78 15 26 H 0.22 3.86 8.06 -2.91 -0.02 3.84 15 Total: -1.00 -68.99 241.83 6.60 -62.39 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.19 Total: 16.12 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 4.55 Total: -2.79 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.58 Total: -77.68 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: 0.41 Total: -41.94 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -68.99 6.60 -62.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388862673.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.513 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds