Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99954 * 2 1 4 4 H 1.48509 * 109.46944 * 265.15504 * 3 2 1 5 5 H 1.48497 * 109.47244 * 25.15585 * 3 2 1 6 6 H 1.48501 * 109.47212 * 145.15794 * 3 2 1 7 7 C 1.37882 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99629 * 351.03137 * 7 2 1 9 9 C 1.50693 * 119.99950 * 171.02802 * 7 2 1 10 10 C 1.50701 * 112.88221 * 314.07840 * 9 7 2 11 11 O 1.20827 * 120.00279 * 131.19731 * 10 9 7 12 12 O 1.34236 * 119.99571 * 311.19052 * 10 9 7 13 13 C 1.53958 * 113.57857 * 85.21460 * 9 7 2 14 14 C 1.52910 * 86.78067 * 89.86925 * 13 9 7 15 15 C 1.52905 * 121.13636 * 259.18196 * 14 13 9 16 16 C 1.53950 * 86.78627 * 209.37984 * 15 14 13 17 17 C 1.52903 * 121.13847 * 150.61963 * 14 13 9 18 18 C 1.52911 * 88.04317 * 24.90142 * 14 13 9 19 19 H 0.96995 * 120.00125 * 0.02562 * 1 2 3 20 20 H 0.96705 * 116.99735 * 184.40609 * 12 10 9 21 21 H 1.09002 * 113.66321 * 204.33690 * 13 9 7 22 22 H 1.08997 * 113.65929 * 335.40012 * 13 9 7 23 23 H 1.08996 * 113.66457 * 323.85084 * 15 14 13 24 24 H 1.09003 * 113.66675 * 94.91177 * 15 14 13 25 25 H 1.08998 * 113.57985 * 270.13471 * 16 15 14 26 26 H 1.09004 * 113.65429 * 139.34314 * 16 15 14 27 27 H 1.09005 * 113.66624 * 265.09009 * 17 14 13 28 28 H 1.09003 * 113.66667 * 36.14546 * 17 14 13 29 29 H 1.09006 * 113.66025 * 220.63256 * 18 14 13 30 30 H 1.08999 * 113.66556 * 89.57232 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5990 1.9873 -1.3952 5 1 1.3992 2.6801 0.5951 6 1 3.4918 1.4719 0.7999 7 6 2.0046 -1.1941 0.0005 8 1 1.4745 -2.1235 0.1468 9 6 3.4977 -1.2021 -0.2030 10 6 3.9384 -0.3206 -1.3431 11 8 4.8422 0.4656 -1.1845 12 8 3.3270 -0.4088 -2.5348 13 6 4.2972 -0.9777 1.0935 14 6 4.2749 -2.4967 1.2681 15 6 3.2926 -3.1678 2.2285 16 6 4.3507 -4.2726 2.4014 17 6 5.4043 -3.2253 1.9972 18 6 4.1057 -2.6158 -0.2470 19 1 -0.4850 0.8400 -0.0004 20 1 3.6865 0.1290 -3.2536 21 1 5.2948 -0.5711 0.9275 22 1 3.7418 -0.4408 1.8625 23 1 3.1071 -2.5939 3.1364 24 1 2.3763 -3.5110 1.7481 25 1 4.2501 -5.0885 1.6857 26 1 4.4547 -4.6217 3.4287 27 1 6.1751 -3.6145 1.3319 28 1 5.8124 -2.6676 2.8400 29 1 3.3974 -3.3874 -0.5487 30 1 5.0495 -2.6694 -0.7897 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575450792.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = -47.237276 kcal Electronic energy + Delta-G solvation = -14624.982396 eV Core-core repulsion = 12193.806741 eV Total energy + Delta-G solvation = -2431.175655 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.36945 -38.68119 -35.25973 -34.46811 -32.14918 -26.90585 -25.17208 -25.13103 -23.56815 -21.90424 -19.13029 -17.73152 -17.19675 -16.57173 -15.50775 -15.16951 -14.73388 -14.21920 -13.53921 -13.25224 -12.77666 -12.29016 -12.07815 -11.61201 -11.52538 -11.14175 -10.83520 -10.73554 -10.44641 -10.12222 -10.08003 -9.88430 -9.58737 -9.39335 -9.19912 -8.87087 -8.60746 -6.23775 -4.23726 3.10521 3.22625 3.35927 3.50421 4.12983 4.32202 4.97654 5.08035 5.15660 5.23067 5.39488 5.57573 5.90224 6.00820 6.11307 6.19922 6.26409 6.29556 6.41381 6.51577 6.64147 6.75511 6.82434 6.88769 7.01943 7.25967 7.34765 7.55850 8.31228 8.77279 8.89915 9.37205 10.87260 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.033656 B = 0.014585 C = 0.012446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.738100 B = 1919.269977 C = 2249.252046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.088 3.912 3 Si 0.845 3.155 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.489 4.489 8 H 0.090 0.910 9 C 0.039 3.961 10 C 0.483 3.517 11 O -0.547 6.547 12 O -0.498 6.498 13 C -0.116 4.116 14 C -0.087 4.087 15 C -0.102 4.102 16 C -0.143 4.143 17 C -0.131 4.131 18 C -0.092 4.092 19 H 0.267 0.733 20 H 0.385 0.615 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -4.870 1.298 9.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.672 3.328 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.171 1.171 7 C -0.526 4.526 8 H 0.108 0.892 9 C 0.037 3.963 10 C 0.329 3.671 11 O -0.439 6.439 12 O -0.306 6.306 13 C -0.154 4.154 14 C -0.087 4.087 15 C -0.139 4.139 16 C -0.180 4.180 17 C -0.168 4.168 18 C -0.130 4.130 19 H 0.078 0.922 20 H 0.240 0.760 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.497 -4.789 1.681 9.054 hybrid contribution 0.596 1.596 -0.625 1.814 sum 8.094 -3.194 1.056 8.765 Atomic orbital electron populations 1.69851 1.06082 1.27301 1.48497 1.24875 0.94615 0.98474 0.93646 0.87442 0.81127 0.84595 0.79676 1.20445 1.21388 1.17072 1.20339 0.86301 0.95393 1.50523 0.89182 1.19807 0.98213 0.91167 0.87083 1.24809 0.77220 0.81557 0.83513 1.90554 1.31038 1.38596 1.83668 1.84776 1.59099 1.65797 1.20939 1.23134 0.99310 0.94697 0.98266 1.22068 0.96301 0.95716 0.94646 1.22506 0.97045 0.95777 0.98619 1.22861 0.97821 0.96952 1.00395 1.22787 0.96314 0.97762 0.99936 1.22590 0.99328 0.96922 0.94122 0.92241 0.76022 0.91082 0.91100 0.90384 0.90680 0.90728 0.92339 0.92193 0.90549 0.90659 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.96 55.43 0.77 -25.35 16 2 C 0.09 2.49 5.41 -17.82 -0.10 2.40 16 3 Si 0.84 22.05 23.68 -169.99 -4.03 18.02 16 4 H -0.28 -7.35 7.00 56.52 0.40 -6.95 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.25 -6.39 5.79 56.52 0.33 -6.06 16 7 C -0.49 -13.03 8.21 -34.44 -0.28 -13.31 16 8 H 0.09 2.53 7.69 -52.49 -0.40 2.13 16 9 C 0.04 0.91 0.66 -155.83 -0.10 0.81 16 10 C 0.48 11.45 4.12 36.01 0.15 11.60 16 11 O -0.55 -13.55 15.26 -18.75 -0.29 -13.83 16 12 O -0.50 -10.79 13.15 -39.27 -0.52 -11.31 16 13 C -0.12 -2.50 5.43 -26.28 -0.14 -2.64 16 14 C -0.09 -1.60 0.97 -154.72 -0.15 -1.75 16 15 C -0.10 -1.75 7.40 -26.29 -0.19 -1.95 16 16 C -0.14 -2.01 8.08 -25.75 -0.21 -2.22 16 17 C -0.13 -1.95 7.84 -26.28 -0.21 -2.16 16 18 C -0.09 -1.79 6.97 -26.28 -0.18 -1.98 16 19 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 20 H 0.38 6.25 9.10 45.56 0.41 6.66 16 21 H 0.07 1.51 7.42 -51.93 -0.39 1.13 16 22 H 0.07 1.59 7.42 -51.93 -0.39 1.21 16 23 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 24 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 30 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -30.96 245.66 -5.10 -36.07 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.33 Total: 3.88 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.42 Total: -11.19 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.77 Total: -25.35 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.80 Total: -25.14 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.03 Total: 18.02 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.96 -5.10 -36.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575450792.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.170 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds