Wall clock time and date at job start Mon Mar 30 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.98377 * 2 1 4 4 C 1.38222 * 120.05308 * 180.02562 * 3 2 1 5 5 C 1.38224 * 120.02081 * 359.96970 * 4 3 2 6 6 C 1.50698 * 120.00875 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47122 * 145.00786 * 6 5 4 8 8 O 1.42905 * 109.47321 * 25.00687 * 6 5 4 9 9 C 1.50697 * 109.47576 * 265.00441 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00428 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 6 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 6 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.38432 * 119.97777 * 0.26466 * 5 4 3 18 18 F 1.35101 * 120.02865 * 179.72053 * 17 5 4 19 19 C 1.38171 * 119.98884 * 179.97438 * 2 1 3 20 20 H 1.08993 * 109.47448 * 90.00380 * 1 2 3 21 21 H 1.09010 * 109.46913 * 210.00041 * 1 2 3 22 22 H 1.08994 * 109.47589 * 329.99598 * 1 2 3 23 23 H 1.07998 * 119.97521 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.99041 * 180.02562 * 4 3 2 25 25 H 0.96696 * 114.00036 * 299.99741 * 8 6 5 26 26 H 0.96991 * 120.00258 * 180.02562 * 12 11 9 27 27 H 1.07999 * 120.01503 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1976 0.0000 4 6 3.5802 1.1993 -0.0005 5 6 4.2732 0.0033 -0.0004 6 6 5.7802 0.0055 -0.0016 7 1 6.1452 -0.8356 0.5879 8 8 6.2553 1.2274 0.5669 9 6 6.2817 -0.1183 -1.4173 10 1 5.5794 -0.1908 -2.2345 11 6 7.6371 -0.1390 -1.6692 12 7 8.0748 -0.2465 -2.9048 13 14 8.8519 -0.0129 -0.2557 14 1 9.1753 -1.3741 0.2419 15 1 10.0941 0.6495 -0.7282 16 1 8.2519 0.7861 0.8428 17 6 3.5825 -1.1963 -0.0053 18 9 4.2588 -2.3659 -0.0110 19 6 2.1976 -1.1967 0.0005 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3634 0.8899 0.5139 23 1 1.6573 2.1325 -0.0004 24 1 4.1189 2.1353 -0.0001 25 1 5.9686 2.0197 0.0924 26 1 9.0282 -0.2614 -3.0820 27 1 1.6577 -2.1321 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606254759.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:20 Heat of formation + Delta-G solvation = -76.797949 kcal Electronic energy + Delta-G solvation = -13600.481796 eV Core-core repulsion = 11044.563989 eV Total energy + Delta-G solvation = -2555.917807 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.19584 -38.91461 -36.13672 -32.32323 -32.22772 -30.10870 -28.41669 -25.82174 -22.54341 -22.14557 -20.21775 -17.58430 -16.57944 -16.05476 -15.65888 -14.93727 -14.78051 -13.91934 -13.62450 -13.42828 -13.23114 -12.96254 -12.82776 -12.02823 -11.79511 -11.63908 -11.37256 -11.00914 -10.78054 -10.50912 -10.08660 -9.22188 -8.74132 -8.53605 -8.39611 -7.83296 -6.15925 -4.28369 1.66315 1.69461 3.37945 3.46739 3.71261 4.04435 4.50211 4.76400 5.08136 5.10203 5.16997 5.45985 5.50802 5.60837 5.65921 5.81693 5.84621 5.94721 6.33115 6.48363 6.60188 6.73760 6.84004 7.26121 7.39581 7.47040 8.23741 8.74327 8.91924 9.46062 10.94258 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.047921 B = 0.009733 C = 0.009219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.157978 B = 2876.053171 C = 3036.331370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.085 4.085 3 C -0.133 4.133 4 C -0.088 4.088 5 C -0.102 4.102 6 C 0.226 3.774 7 H 0.070 0.930 8 O -0.574 6.574 9 C -0.556 4.556 10 H 0.074 0.926 11 C 0.087 3.913 12 N -0.888 5.888 13 Si 0.869 3.131 14 H -0.285 1.285 15 H -0.293 1.293 16 H -0.217 1.217 17 C 0.104 3.896 18 F -0.136 7.136 19 C -0.159 4.159 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.356 0.644 26 H 0.266 0.734 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 1.986 6.427 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.106 4.106 5 C -0.104 4.104 6 C 0.169 3.831 7 H 0.088 0.912 8 O -0.381 6.381 9 C -0.593 4.593 10 H 0.092 0.908 11 C -0.118 4.118 12 N -0.525 5.525 13 Si 0.695 3.305 14 H -0.211 1.211 15 H -0.220 1.220 16 H -0.140 1.140 17 C 0.085 3.915 18 F -0.114 7.114 19 C -0.178 4.178 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.139 0.861 24 H 0.147 0.853 25 H 0.204 0.796 26 H 0.076 0.924 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.333 1.522 6.743 13.274 hybrid contribution 0.582 0.007 -0.082 0.588 sum -10.750 1.529 6.661 12.739 Atomic orbital electron populations 1.20714 0.91188 1.02381 1.02111 1.19543 0.95733 0.92437 1.00823 1.20945 0.94123 0.97236 1.02801 1.20765 0.93520 0.97589 0.98726 1.21060 0.99802 0.91713 0.97776 1.18778 0.83958 0.85050 0.95306 0.91221 1.86740 1.76585 1.16424 1.58333 1.21297 0.93122 1.53936 0.90921 0.90821 1.24974 0.98550 0.92377 0.95928 1.69937 1.14947 1.47990 1.19586 0.87052 0.79544 0.79072 0.84870 1.21108 1.21967 1.13981 1.17491 0.89524 0.81416 1.03076 1.91477 1.80460 1.45743 1.93720 1.20878 0.92193 0.98823 1.05941 0.91359 0.91837 0.91679 0.86133 0.85316 0.79595 0.92398 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 15 2 C -0.09 -1.25 5.88 -104.64 -0.62 -1.87 15 3 C -0.13 -2.01 9.70 -39.58 -0.38 -2.39 15 4 C -0.09 -1.57 9.30 -39.59 -0.37 -1.93 15 5 C -0.10 -2.17 5.01 -104.56 -0.52 -2.69 15 6 C 0.23 5.49 2.32 -29.04 -0.07 5.43 15 7 H 0.07 1.77 7.23 -51.93 -0.38 1.40 15 8 O -0.57 -13.00 9.80 -35.23 -0.35 -13.34 15 9 C -0.56 -15.74 9.33 -34.44 -0.32 -16.06 15 10 H 0.07 2.29 7.98 -52.49 -0.42 1.87 15 11 C 0.09 2.52 5.47 -17.82 -0.10 2.42 15 12 N -0.89 -27.23 13.96 55.43 0.77 -26.46 15 13 Si 0.87 21.84 26.99 -169.99 -4.59 17.26 15 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 15 15 H -0.29 -7.34 7.11 56.52 0.40 -6.93 15 16 H -0.22 -5.30 5.31 56.52 0.30 -5.00 15 17 C 0.10 2.12 7.24 -39.42 -0.29 1.84 15 18 F -0.14 -2.96 16.57 2.25 0.04 -2.92 15 19 C -0.16 -2.66 9.68 -39.51 -0.38 -3.04 15 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.06 0.60 8.09 -51.92 -0.42 0.18 15 22 H 0.06 0.59 8.08 -51.93 -0.42 0.17 15 23 H 0.12 1.45 8.06 -52.49 -0.42 1.02 15 24 H 0.13 2.05 6.41 -52.49 -0.34 1.71 15 25 H 0.36 6.96 7.32 45.56 0.33 7.29 15 26 H 0.27 7.65 8.31 -40.82 -0.34 7.31 15 27 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 238.45 15.07 3.59 3.59 Total: -1.00 -31.75 238.45 -5.36 -37.10 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -2.14 Total: 3.85 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.68 Total: -19.08 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.77 Total: -26.46 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.35 Total: -13.34 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.26 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.75 -5.36 -37.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606254759.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.693 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds